Pairwise Alignments

Query, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 86.3 bits (212), Expect = 6e-22
 Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 2/162 (1%)

Query: 17  LTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQ-QIKEPRAFLATTAGR 75
           L A + EH+  L  +L +++   Q AAD+A + +++++ + E    +   R+F+   AG 
Sbjct: 9   LLASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVAGN 68

Query: 76  LLIDGARRRRIEKAYMEALVIQCEDA-GMPDPAAIHVALQALERIAEMLAGLPAKAREAF 134
           L ID  RR +   A  +     CE A   P P A  +A + L+ + + L  LP  AR+A 
Sbjct: 69  LAIDALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNARQAL 128

Query: 135 LLSRLDGLTYSEIATRLDVSASTVKNYISSALVHCYHSLHPA 176
           LL+R++GLT  ++A RL VS S V  YI  AL HC   L  A
Sbjct: 129 LLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRLKQA 170