Pairwise Alignments

Query, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 88.6 bits (218), Expect = 5e-23
 Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 2/148 (1%)

Query: 21  YSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQIKEPRAFLATTAGRLLIDG 80
           + +H+  L G   +KL   Q A DL HDAF+RVL     +Q+++PRA+L   A  + +DG
Sbjct: 7   FLDHYHELIGTWTRKLRSRQQAEDLTHDAFVRVLETPR-EQVEQPRAYLHQAARNIAVDG 65

Query: 81  ARRRRIEKAYMEALVIQCEDAGMPDPAAIHVALQALERIAEMLAGLPAKAREAFLLSRLD 140
            RR    +A +E    +    G  DP A   AL+  + +   LA LP   R+ F+  +L+
Sbjct: 66  FRREDRRQA-LEREAFEEGATGSGDPEAYVHALELADSVERALAELPLNCRQVFIWQKLE 124

Query: 141 GLTYSEIATRLDVSASTVKNYISSALVH 168
           GLT +EIA R+ +S + V+ Y+   L H
Sbjct: 125 GLTQAEIAERMGLSKNMVEKYMIRTLRH 152