Pairwise Alignments

Query, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  139 bits (349), Expect = 3e-38
 Identities = 70/161 (43%), Positives = 103/161 (63%), Gaps = 1/161 (0%)

Query: 10  DSVRQQTLTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQIKEPRAFL 69
           D+++   +  +Y  HH WL GWLR ++GCS+HAADLA D F+R+L   +   +KEPRA+L
Sbjct: 5   DTLKPTEVALLYQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEPRAYL 64

Query: 70  ATTAGRLLIDGARRRRIEKAYMEALVIQCEDAGMPDPAAIHVALQALERIAEMLAGLPAK 129
           ++ A  L+ID  RRR +E+AY E L     +A +P      V L +LER+   L  L  +
Sbjct: 65  SSIARGLMIDQFRRRALERAYQEGLA-HLPEAEVPSEEDKLVILDSLERLDRALQQLKPR 123

Query: 130 AREAFLLSRLDGLTYSEIATRLDVSASTVKNYISSALVHCY 170
            R+AFLL++LDGL+  ++A RL VS +TV+  ++ AL  CY
Sbjct: 124 VRQAFLLAQLDGLSIVQVAQRLGVSRATVERDLAKALGACY 164