Pairwise Alignments

Query, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 178 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  107 bits (266), Expect = 2e-28
 Identities = 62/174 (35%), Positives = 98/174 (56%), Gaps = 13/174 (7%)

Query: 1   MHDIPAAPGDSVRQQTLTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQ 60
           M+  P+AP        L  +Y  HHGW+  WL++KLG +  AA+LA D F+R  +L++P+
Sbjct: 1   MNASPSAPAPGF---DLEELYRSHHGWIRQWLQRKLGNAHDAAELAQDVFVR--LLSKPR 55

Query: 61  QIKE---PRAFLATTAGRLLIDGARRRRIEKAYMEALVIQCEDAGMPDPAAIH--VALQA 115
              +    RA+L   +    +D  RRRR+E+AY+E L  Q E      P+  H  V L+ 
Sbjct: 56  VFNDHEHARAYLGRMSRNACVDFWRRRRVEQAYLEVLAAQPEQLA---PSLEHQAVILET 112

Query: 116 LERIAEMLAGLPAKAREAFLLSRLDGLTYSEIATRLDVSASTVKNYISSALVHC 169
           LE++  M   +P +  EAF +++L G+   EIA +L VS  +V +Y++ A+  C
Sbjct: 113 LEQLQAMFERMPQRVAEAFSMAQLQGMKQREIAEQLGVSERSVNSYLAQAMYQC 166