Pairwise Alignments

Query, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  129 bits (324), Expect = 3e-35
 Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 1/156 (0%)

Query: 19  AMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQIKEPRAFLATTAGRLLI 78
           A+Y +H GWL  WL++ + C Q A DL+ D F+R+L   +    +EPRAFLA  A  L+ 
Sbjct: 14  ALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREPRAFLAAVAKGLMF 73

Query: 79  DGARRRRIEKAYMEALVIQCEDAGMPDPAAIHVALQALERIAEMLAGLPAKAREAFLLSR 138
           D  RR  +E+AY+  L +   +A  P P   H+ L+ L+ I  +L  L +KAR AFL SR
Sbjct: 74  DHFRRAALEQAYLAELAL-IPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHSR 132

Query: 139 LDGLTYSEIATRLDVSASTVKNYISSALVHCYHSLH 174
           LDG+ ++EIA RL VS S V+ YI+  +  CY +L+
Sbjct: 133 LDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYVALY 168