Pairwise Alignments

Query, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 173 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  147 bits (371), Expect = 1e-40
 Identities = 76/164 (46%), Positives = 102/164 (62%), Gaps = 1/164 (0%)

Query: 7   APGDSVRQQTLTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQIKEPR 66
           AP       ++  +YS+HHGWLH WLR KLG +  AADLA D F+R+L   E  Q+  PR
Sbjct: 3   APSSMPSNDSVQTLYSDHHGWLHTWLRSKLGNAADAADLAQDTFVRLLQRREQLQLNAPR 62

Query: 67  AFLATTAGRLLIDGARRRRIEKAYMEALVIQCEDAGMPDPAAIHVALQALERIAEMLAGL 126
           AFL T A  L+ID  RR  + +AY+EAL     +A +P      + L+ LERIA ML GL
Sbjct: 63  AFLRTVARGLVIDHWRREELHRAYLEALA-HVPEALVPSVETRELLLELLERIARMLDGL 121

Query: 127 PAKAREAFLLSRLDGLTYSEIATRLDVSASTVKNYISSALVHCY 170
             K R AFLL++ +GL +  IA ++ +S  TV+ YI++AL HCY
Sbjct: 122 KPKVRRAFLLAQCEGLKHQAIAEQMGISVRTVERYIANALYHCY 165