Pairwise Alignments

Query, 605 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  336 bits (861), Expect = 2e-96
 Identities = 232/619 (37%), Positives = 329/619 (53%), Gaps = 44/619 (7%)

Query: 11  IQESWRRCRAFGLDHQSTPSFDQLPAEGISQLLESQHSLVQTTHQE------VLPYYENI 64
           I  SWRR    GLD         L  E +   LE  H L     +       V P  + +
Sbjct: 38  IDASWRRSLGHGLDC--------LQGEQVGLGLEQGHDLRLLLERNRLLIDAVTPELDYL 89

Query: 65  LSNSNC--LIMLADNQGQVLTSWGTQRFIDPKLARGFNPGASWMERSSGTNAIGTALACA 122
           ++      +++L D Q  VL   G +  +  +  R  +PG+ W E   GTNAIGTA+   
Sbjct: 90  VARQGKAGIVILGDAQANVLAIEGQKHVLQREGLRDLHPGSCWSESLRGTNAIGTAVVEG 149

Query: 123 QAVHIEHDEHFLKANRFMTGSAAPIFDAQREIIAVLDVSSDSYLP-PSHTLGMVKMMSQT 181
           +   I   EH+L      + ++ P+ D + E+I VLD++ +  +  P  +L  + + +  
Sbjct: 150 RPTLINCGEHYLDRLSPFSCTSVPLRDPRGEVIGVLDITREGVMAQPQDSLSTLMLAAGN 209

Query: 182 VENRLILNLFRGEHFQLTFNTGLSNLDSQWAGLLIFDESGQVLSANRRADNLLGIS---- 237
           +E+RL   L   +   L F++    L+S W GLL     G+VL+AN  A  LL +     
Sbjct: 210 IESRLF-GLCHPDQLVLAFHSRPQYLNSAWHGLLALSLDGEVLAANDGACQLLQVPRHEL 268

Query: 238 LSRVMIDSLFKVSLLELLNQPEGLPFSLQAAGRNRFQCVLRRPKQMPVQARVFTEPTPPT 297
           + R   D L + S   +    +G   S+Q A +  F     R  Q+P   RV    TP T
Sbjct: 269 IGRRSTDLLGERSPAFIARLWQGGVSSVQTA-KGEFYF---RALQLPRHGRV----TPST 320

Query: 298 PASI--------GLKTLHFGDVRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQ 349
           P+S          L  L  GD R+ + +R A + L   +P+L+ GETG GKEV  +ALHQ
Sbjct: 321 PSSKPALSKQSPALDALAGGDQRLARNLRMARQGLGNGLPVLLLGETGTGKEVVARALHQ 380

Query: 350 ASSRSQKAFIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTLFLDEIG 409
           AS R+ K F+AVNCAAIP  L+ESELFGY +GAFTG+ + G +G + +A  GTLFLDEIG
Sbjct: 381 ASPRADKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRGGMVGRLMQAHGGTLFLDEIG 440

Query: 410 DMPLPTQARLLRVLQERCVQPVGSSELFPVDLRIISATNRALRELVQAGRFREDLYYRIG 469
           DMPL  QARLLRVLQER V P+G+ +   +D+ +I AT+R L+ LVQ   FREDL+YR+ 
Sbjct: 441 DMPLALQARLLRVLQERRVAPLGAGDEQDIDVALICATHRDLKRLVQEQHFREDLFYRVN 500

Query: 470 GLTLELPPLRERTDKQALFQQLWQQHREPTQWAGLSAEVLALFEQHPWPGNLRQVSSVLQ 529
           G++L LP LRER D  A+ Q L    +   +   L   + AL E   WPGN+RQ+  V++
Sbjct: 501 GVSLRLPALRERDDLAAIIQGLLD--KADARGVTLDPALTALLEGFDWPGNIRQLEMVVR 558

Query: 530 VALAMAE--EQPIRAEHLPDDFFVDLKVDPPLPASEYLDDSID-LNQRLKAAGGNISHLA 586
            ALAM E  EQ +  +HL  D  +D       P+    D  ++ +   L    GN+S  A
Sbjct: 559 TALAMREDGEQVLTLDHL-TDCLLDELASSAAPSGSLKDSELEQIRGALARHQGNVSAAA 617

Query: 587 RELGVSRNTLYKRLRQHEG 605
             LG+SR TLY++L+Q  G
Sbjct: 618 AALGISRATLYRKLKQLRG 636