Pairwise Alignments

Query, 605 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 591 a.a., putative sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  654 bits (1688), Expect = 0.0
 Identities = 336/600 (56%), Positives = 430/600 (71%), Gaps = 22/600 (3%)

Query: 2   AEPLAHDTLIQESWRRCRAFGLDHQSTPSFDQLPAEGISQLLESQHSLVQTTHQEVLPYY 61
           A    H  LIQ SW RCRA GL  Q  P FD L    +S LLE + +L++ T +EVLP+Y
Sbjct: 12  ASASTHTQLIQASWDRCRAHGLQPQHAPDFDCLSRAELSALLERRQNLLRLTREEVLPHY 71

Query: 62  ENILSNSNCLIMLADNQGQVLTSWGTQRFIDPKLARGFNPGASWMERSSGTNAIGTALAC 121
            ++L N++ L+MLAD  G +L SWG++RFI+P+   GF+ GA W ER  GTNA+GT L C
Sbjct: 72  AHLLGNASYLVMLADASGCLLDSWGSRRFIEPRQHHGFSAGAHWHERGVGTNALGTTLIC 131

Query: 122 AQAVHIEHDEHFLKANRFMTGSAAPIFDAQREIIAVLDVSSDSYLPPSHTLGMVKMMSQT 181
           A+AVH+  DEHFL+ NR+M+ +AAP+FDA R+++  LDV+SD YLP S TLG+V+MM Q+
Sbjct: 132 AEAVHVGQDEHFLRQNRYMSSAAAPLFDAARQLVGALDVASDGYLPASQTLGLVRMMGQS 191

Query: 182 VENRLILNLFRGEHFQLTFNTGLSNLDSQWAGLLIFDESGQVLSANRRADNLLGISLSRV 241
           +ENRLIL     +H QL FN+   NLDS WAGLL+FDE GQVL+AN RAD+LLG++  + 
Sbjct: 192 LENRLILAEHADQHAQLIFNSASDNLDSPWAGLLVFDERGQVLAANHRADSLLGVNPLQQ 251

Query: 242 MIDSLFKVSLLELLNQPEGLPFSLQAAGRNRFQCVLRRPKQMPVQARVFTEPTPPTPASI 301
            I+ LF++ L +LL+ P   PF+LQA GRNRF C    P++        T   P   ++ 
Sbjct: 252 NIEQLFQLPLQQLLSHPRQQPFALQATGRNRFHCQWHPPRE--------TTRRPEAGSA- 302

Query: 302 GLKTLHFGDVRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQASSRSQKAFIAV 361
                   + R+EKA+ QA  LLEKDIP+L+ GETGVGKEVFV ALH+ASSR+++  +AV
Sbjct: 303 --------EPRLEKALIQAGLLLEKDIPVLVEGETGVGKEVFVDALHRASSRARQPLVAV 354

Query: 362 NCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTLFLDEIGDMPLPTQARLLR 421
           NCAAIPAELVESELFGY+KGAFTGA+ KG+ GLIRKAD G LFLDEIGDMPLPTQARLLR
Sbjct: 355 NCAAIPAELVESELFGYDKGAFTGAHHKGNPGLIRKADHGILFLDEIGDMPLPTQARLLR 414

Query: 422 VLQERCVQPVGSSELFPVDLRIISATNRALRELVQAGRFREDLYYRIGGLTLELPPLRER 481
           VLQ R +QP+GS E  PVD+R++SA+NR L + V+AGRFR+DLYYRI GLTL LPPLRER
Sbjct: 415 VLQSRSIQPLGSGEPVPVDIRVVSASNRNLADEVRAGRFRQDLYYRIAGLTLVLPPLRER 474

Query: 482 TDKQALFQQLWQQHREPTQWAGLSAEVLALFEQHPWPGNLRQVSSVLQVALAMAEEQPIR 541
            D++ L +Q+  ++REP Q A L   ++ LF+QHPWPGNLR++ SVLQVALA+A   P+ 
Sbjct: 475 ADRRQLIEQVHARYREPGQPARLPPAIIDLFDQHPWPGNLRELVSVLQVALALAANGPVG 534

Query: 542 AEHLPDDFFVDLKVDPPLPASEYLDDSIDLNQRLKAAGGNISHLARELGVSRNTLYKRLR 601
            EHLP  F  + K   P+   E      DL   ++ A GN+S +AR LG+SR TLYKRLR
Sbjct: 535 VEHLPAGFLAESKTPVPIATEE-----TDLQSLVEQANGNLSAVARRLGISRTTLYKRLR 589