Pairwise Alignments

Query, 605 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  322 bits (824), Expect = 4e-92
 Identities = 229/653 (35%), Positives = 335/653 (51%), Gaps = 71/653 (10%)

Query: 8   DTLIQESWRRCRAFGLDHQSTPSFDQLPAE-GISQLLESQ---HSLVQTTHQEVLPYYEN 63
           D  I  SW RC     D+   P+  + P      +LLES+   H ++Q    E+   ++ 
Sbjct: 27  DPSIARSWLRCLE---DYHLDPAVIEAPVVLEHGRLLESRERLHQVLQIADHEMNSLHQQ 83

Query: 64  ILSNSNCLIMLADNQGQVLTSWGTQRFIDPKLARGFNPGASWMERSSGTNAIGTALACAQ 123
            LS +   ++L D +G +L               G   GA W E   GTN IGT L   Q
Sbjct: 84  -LSGAGHAVLLTDARGVILNCVSAPAERRSFERAGLWLGADWSEAREGTNGIGTCLVERQ 142

Query: 124 AVHIEHDEHFLKANRFMTGSAAPIFDAQREIIAVLDVSSD----SYLPPSHTLGMVKMMS 179
           A+ I  +EHF   +  +T SA+P+FD   +++AVLDVSS     S     HT+ +V + +
Sbjct: 143 ALTIHQNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDVSRQSQFHTMALVNLSA 202

Query: 180 QTVENRLILNLFRGEHFQLTFNTGLSNLDSQWAGLLIFDESGQVLSANRRADNLLGISLS 239
           + +E+   L  F  + + L F+    ++     GLL FD  G++ +AN+ A NLLG    
Sbjct: 203 KMIESCYFLRHFE-QQWLLRFHLQAESVGLFSEGLLAFDGDGRICAANQSALNLLGTVRG 261

Query: 240 RVM---IDSLFKVSLLELLNQ--PEGLP-FSLQAAGRNRFQCVLRRPKQMPVQARVFTEP 293
            V+   ++  F  S  E+ ++  P G   + L+     +    LR   + PV +    +P
Sbjct: 262 GVLGKPLECFFACSHDEMFSRATPGGSAVWPLRTLDGRQVFASLRGQARAPVWSVPAAQP 321

Query: 294 TPPTPASIGLKTLHFGDVRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQASSR 353
            P       +  L   D  ++   R++ R+ E+D+PLL+ GETG GKE F +A+HQAS R
Sbjct: 322 RPAGEVEPLVCLL---DPALQNDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASER 378

Query: 354 SQKAFIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTLFLDEIGDMPL 413
             K F+A+NCA+IP  L+ESELFGY  G+FTGA ++G  G + +AD GTL LDEIGDMPL
Sbjct: 379 RGKPFVAINCASIPESLIESELFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPL 438

Query: 414 PTQARLLRVLQERCVQPVGSSELFPVDLRIISATNRALRELVQAGRFREDLYYRIGGLTL 473
             Q RLLRVL+ER V P+G  E   VD+RI+SAT+R L E V+ G FREDLYYR+ GL +
Sbjct: 439 ALQTRLLRVLEERQVVPIG-GEPQAVDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEV 497

Query: 474 ELPPLRERTDKQALFQQLWQQHREPTQWAGLSAEVLALFEQHPWPGNLRQVSSVLQVALA 533
            LP +RER+DK  L   L +Q  +  QW  +            WPGN+RQ+ +VL+  +A
Sbjct: 498 ALPAVRERSDKAQLLDFLLRQETQ-GQWIDIEPRARQALLAFNWPGNVRQMRNVLRTLVA 556

Query: 534 MAEEQPIRAEHLPDDFFVDLKVDPPLP--------------------------------A 561
           + E+  I    LP      ++  PPL                                 A
Sbjct: 557 LCEDARITFADLP----AVIRTSPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGA 612

Query: 562 SEYLDDSID-----------LNQRLKAAGGNISHLARELGVSRNTLYKRLRQH 603
           +E   +S             L + L+A   +++ +A  LG+SRNTLY++LR+H
Sbjct: 613 AEIEGESAGTEVLLDAERQALKEVLEAKHWHLTRVAEHLGISRNTLYRKLRKH 665