Pairwise Alignments

Query, 1027 a.a., multidrug transporter from Pseudomonas simiae WCS417

Subject, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score = 1153 bits (2982), Expect = 0.0
 Identities = 581/1005 (57%), Positives = 751/1005 (74%)

Query: 5    NLSELAVKHRAVTLFLIIAILAAGIFSFGKLGRAEDPSFTVKVMTITAAWPGATAQEMQE 64
            NLS LAV+ R++TLFLI+ I  AG  +F KLGRAEDP FTVK MTI  AWPGATAQEMQ+
Sbjct: 7    NLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQD 66

Query: 65   QVADRLEKRLQELDYYDRVETIAQPGFVSMRMTYKESTRPSEIQDLFYQTRKKLSDEAAK 124
             VA+ LEKR+QEL +YDR ET  +PG     ++ ++ T PS +Q+ FYQ RKK  D+A  
Sbjct: 67   LVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQAKL 126

Query: 125  LPQGVIGPFFNDEYSDVYFALYALEAEHLPHRQQVQMAEELRQGLLNLPGVKKVNILGEQ 184
            +P GVIGP  NDE+SDV FA+YAL+A+  P RQ V+ AE LRQ LL++PGVKKVNI+GEQ
Sbjct: 127  MPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIGEQ 186

Query: 185  AQRVFVEFSYERLATLGIKPDQIFAALAAQNAVAPSGFVETAGARAYIRIDGAFDSLSLI 244
            A+R+FV FS++RLATLGI P  IF+AL  QNA++PSG VET G +  +R+DGAFD L+ I
Sbjct: 187  AERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLAKI 246

Query: 245  ENVPLEVNGRVLRIANVATVSRGYEDPPSYRIRHQGDPALMLGVIMEKHWNGLELDKSLK 304
               P+   GR L++++VA V RGYEDP ++ +R+ G+PAL+LG++M + WNGL+L K+L+
Sbjct: 247  RETPVVAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKALE 306

Query: 305  AQEAKIQADLPLGVNFAKVSDQAKNIRLAVNEFMLKFFVALAVVMVISLLALGFRVGLVV 364
            A+ AKI   +PLG+  +KV+DQA NI  +V+EFM+KFFVAL VVM++  L++G+RVG+VV
Sbjct: 307  AETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGWRVGVVV 366

Query: 365  AAAVPLTLSVVFVIMLLTGREFDRITLGALIISLGLLVDDAIIAIEMMVVKLEEGFDRIH 424
            AAAVPLTL++VFV+M  TG+ FDRITLG+LI++LGLLVDDAIIAIEMMVVK+EEG+DRI 
Sbjct: 367  AAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDRIK 426

Query: 425  AATFAWSSTAAPMLTGTLVTIIGFLPVGFARSGAGEYAGNIFWIVGFALISSWLVAVVFT 484
            A+ +AWS TAAPML+GTLVT IGF+P GFA+S AGEY  N+FWIVG ALI+SW+VAV FT
Sbjct: 427  ASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVAFT 486

Query: 485  PYLGVKLLPQIKPVPGGHDAIYAGRYYQKLRSLVQACVRRRWLVTGLVVGAFVLCVAGMG 544
            PYLGVKLLP+IK + GGH AIY  R+Y + R+L+   +  +WLV G VV  FV  V GMG
Sbjct: 487  PYLGVKLLPRIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLVAGTVVSTFVAAVLGMG 546

Query: 545  VVKKQFFPNSDRSELILEVYMPPGSAFKSTEAVAARLEKALLQEPQTTLVDTYVGGGAPR 604
            +VKKQFFP SDR E+++E+ MP G++ + T A A ++E  L Q+ +  +V TY+G G PR
Sbjct: 547  LVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQEEAKIVTTYIGQGPPR 606

Query: 605  FFLSLNPELPDPAFAKLIVQTPDSHARDALKLRMRERIAAGEFASARVRVTQLLFGPPVP 664
            FFL++ PELPDP+FAK++V T +  AR+ALK R+RE  + G    A+VRVTQL+FGP  P
Sbjct: 607  FFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVTQLVFGPYSP 666

Query: 665  FPVVFRVSGPNLDVLRGVSEDVRKVVAANTLTKDAFLDWGERTSGYRLVLDQDRLRLLGF 724
            +PV +RV GP+   LR ++  V+ V+ A+ + K    DWG         L+QDRL+ +G 
Sbjct: 667  YPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLNQDRLQSVGL 726

Query: 725  TPNEVKSQLNALLSGNPITEVREGNRTVSVVARAQGGQREDLGNLNNMTLTNSAGTSVPL 784
            T   V  QL  LL+G PIT VRE  R+V VV RA G  R D   + N TL  S G  VP+
Sbjct: 727  TSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLVGSNGQRVPV 786

Query: 785  AQVGHFQAVMEEPILKRRNRATTVEVRADIIDGVQPPDVEMAVYKDLQPLIAKLPAGYQI 844
            +Q+G     ME+PIL+RR+R  T+ VR DI +G+QPPDV  A++KDLQP++ +LPAGY+I
Sbjct: 787  SQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIVTQLPAGYKI 846

Query: 845  DIGGPVEESAKANVALAALFPIMILLTLTVIMFQVRSFGVMFMVFATAPLGLIGAVPTLL 904
            ++ G +EESAKA+ A+  L PIMI LTL +I+ QVRS   M MVF T+PLGLIG VP LL
Sbjct: 847  EMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGLIGVVPVLL 906

Query: 905  LFNQPFGFNAILGLIGIGGILMRNTLIFTDQIRQNQDHGMPIHAAIIEATVRRARPVILT 964
            LF QPFG NA++GLI + GILMRNTLI   QI  NQ  G+    A++EATV+RARPV+LT
Sbjct: 907  LFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQRARPVLLT 966

Query: 965  ALAAALAFIPLTLSVFWSSLAYVLIGGVLVGTVLTLLFLPALCSL 1009
            ALAA LAFIPLT SVFW +LAY LIGG  VGT++TL+FLPA+ S+
Sbjct: 967  ALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSI 1011