Pairwise Alignments

Query, 368 a.a., secretion protein HylD from Pseudomonas simiae WCS417

Subject, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

 Score =  259 bits (663), Expect = 6e-74
 Identities = 155/343 (45%), Positives = 203/343 (59%), Gaps = 6/343 (1%)

Query: 9   LTPLALLIILNGCNSKADTAAETPLPRPVLAAKVEAAGTQQSAYTGVVAARTESDLGFRV 68
           L PLAL+     C   +        P  V A  V+ A     +++GVV ART+SDLGFRV
Sbjct: 12  LLPLALV----ACGDSSPGKDPRDTPPVVKAVSVQDASALARSFSGVVVARTQSDLGFRV 67

Query: 69  SGKVIERKVDPGQHVSRGDTLLVLDIGDFELALRSAKNRVHAAQAQLRQRRDDENRYQRL 128
           SGK+++R VD GQ V RG  L+ +D  D  L  R+ +  V AA+A+ +Q  DDE RY+ L
Sbjct: 68  SGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGL 127

Query: 129 ASTGAVSRQIFDQSATLLRVAEAELASAQSDASQIENRRTYSVLKADGDGIITDVRVDRG 188
            + GAVS   +DQ       A+A+L++AQ+ A    N   Y+VL AD DG++ D   + G
Sbjct: 128 VADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPG 187

Query: 189 QVVAEGQIVARLAHDGAREAIVNLPENQRDQAAQKALAFPFGAPDQAVTATLRELSASAD 248
           QVV+ GQ V RLA  G REA+V LPE  R      ALA  FG P QAV A LR LS +AD
Sbjct: 188 QVVSAGQAVVRLARAGQREAVVYLPETLRPAPGSTALATLFGKPAQAVPAKLRLLSDAAD 247

Query: 249 PTTRTYRARYVLHGAVDRFALGSTITVRL-QGNGQAQQTRVPIGALLDSGQGTGVWLI-G 306
           P TRT+ ARYVL G +    LG+TIT+ +   +   +  ++PIGAL D G G GVW+I G
Sbjct: 248 PITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWVIAG 307

Query: 307 ADDKVSFAPVKVASLGQEDALLDSGVSPGQVIVALGAHLLHSG 349
              KVS+  V+V S+  E A++ S +  G  IVALGAHLL  G
Sbjct: 308 QPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDG 350