Pairwise Alignments

Query, 176 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

 Score =  140 bits (354), Expect = 9e-39
 Identities = 72/156 (46%), Positives = 100/156 (64%)

Query: 14  LYGTHHGWLLGLLRRRLNDRWDAADLAHDTFIRILSRPPAETDPVRQRSYLATIARGLCI 73
           LY  H GWL   LRRR+ + WDAADL+ DTF+RIL+      D    R+YL T+ + L  
Sbjct: 15  LYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLTVGKRLLS 74

Query: 74  DHWRRRQLERTWLQTLAERPEALQPSPEQRAIIVETLVEVDAMLARLPKKVSEAFLLAQL 133
           +  +RR LE+ +L  LA+ PE   PSPEQR +++ETL  +D +L  L   + +AFL +QL
Sbjct: 75  NFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPAIRKAFLWSQL 134

Query: 134 HGLPYKQIAEQLGVGERMVKKYMAQALLHCAILEAE 169
            GL Y +I ++LGV +R VK+YMAQA  HC + E +
Sbjct: 135 EGLGYAEIGQRLGVCQRSVKRYMAQAYEHCLLAELQ 170