Pairwise Alignments

Query, 176 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

 Score =  146 bits (368), Expect = 2e-40
 Identities = 77/162 (47%), Positives = 102/162 (62%)

Query: 6   SVSTSFTHLYGTHHGWLLGLLRRRLNDRWDAADLAHDTFIRILSRPPAETDPVRQRSYLA 65
           S++     LY  HHGWL G L R+L +  DAADLAHDTF+R+LSR          R+ L 
Sbjct: 7   SLNLQVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNEPRALLT 66

Query: 66  TIARGLCIDHWRRRQLERTWLQTLAERPEALQPSPEQRAIIVETLVEVDAMLARLPKKVS 125
            IA+GL +D WRR+ +ER +L+ +A  P+   PSPE R +I+ETL  +DAML  +P +V 
Sbjct: 67  HIAKGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMPARVR 126

Query: 126 EAFLLAQLHGLPYKQIAEQLGVGERMVKKYMAQALLHCAILE 167
           + FLL+QL GL Y QIAEQL V    +K+ M  A L C  +E
Sbjct: 127 QVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLACLSIE 168