Pairwise Alignments

Query, 438 a.a., porin from Pseudomonas simiae WCS417

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  258 bits (660), Expect = 2e-73
 Identities = 150/437 (34%), Positives = 233/437 (53%), Gaps = 39/437 (8%)

Query: 13  LGAAQQAAASGFIDDSKASLDLRNFYYNQDTRNAKAASDK------EWGQAFMFNYQSGF 66
           L A   A A+GF++D+ A ++ RN Y+N+D R+  ++S +      EW Q F+ N QSG+
Sbjct: 23  LCAGVNAQAAGFLEDASAKIEARNVYFNRDFRDGYSSSSQGASKREEWAQGFILNVQSGY 82

Query: 67  TEGTVGLGLDLQEWYGLRLDASGRAGKAGADNTPGSVFPLDDGKAVHDFSKTGVTGKLRI 126
           T+G VG+G+D    +G +LD+S     +G   + G     D  ++   ++K G+  K+++
Sbjct: 83  TQGPVGVGVDALGMFGFKLDSSPADSNSGLLPSSGH----DPRRSADQYAKMGLAAKVKV 138

Query: 127 AQTQLKAGNLMPKLPVLTTEDGRLLPQTFRGYQVESKDFRDVNLIAGKIEQVMDRNSSNG 186
           + T LK G++MP +P+L   DGRLLP  F G  + S++  D+     ++++   R+S++ 
Sbjct: 139 SNTVLKYGSMMPDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYTARDSTDR 198

Query: 187 QGLSIAGANDPVK-GKASNQFYYGGVDYAVSKRLQVQYYYASLENFYQQHFLGLVHNWQL 245
           Q + +   N        ++ F   GVDY  ++R   QY  A LEN Y+QHFLGLV +  L
Sbjct: 199 QDIRVHCKNKRYACDTEADHFDLAGVDYRFNERFSAQYQVAKLENIYRQHFLGLVASQPL 258

Query: 246 PVGQLKSDLRYFYSTADGKNGSVAGRGEGYVSSGYYGPGVNAGKVDNRLWSAMFTYALSG 305
           PVG L +D+R   S   G                       AG++D+R +S M  Y+L G
Sbjct: 259 PVGSLSADMRLIKSDDIG--------------------NARAGEIDHRAFSGMLGYSLGG 298

Query: 306 HSLSLGYQKTTGQSDFPHINQGQGRSLYLITNSQSLKFVNAGEQATVGSYAYDFAGLGVP 365
           H LS G+Q+  G S  P+++   G + YL+  +Q   F  A E++    Y YDF  LGVP
Sbjct: 299 HKLSAGWQRMYGNSAMPYLD---GSNPYLVNYAQVNDFAAAQERSWQVRYDYDFKALGVP 355

Query: 366 GLRSSVTYIHGSHIRTVGR--DNSEWERDLRLDYVIPTGTLKGLGFTWRSAVLRGND--- 420
           GL     YI+G +I+  G   +  EWERD    Y + +GT K +    R++  R N    
Sbjct: 356 GLTFFTRYINGDNIKVPGSSVEGKEWERDTEFKYQVQSGTFKDVSVRLRNSTYRSNYERW 415

Query: 421 TADKDETRLIVSYSIPL 437
             D DETR+IVSY+  +
Sbjct: 416 ARDMDETRVIVSYNFSI 432