Pairwise Alignments

Query, 438 a.a., porin from Pseudomonas simiae WCS417

Subject, 447 a.a., tyrosine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  200 bits (509), Expect = 7e-56
 Identities = 140/464 (30%), Positives = 222/464 (47%), Gaps = 59/464 (12%)

Query: 6   CLALAV--SLGAAQQAAASGFIDDSKASLDLRNFYYNQDTRNAKAAS-----------DK 52
           CLALA   S   A + +A GF++ S  S+  RNFY+N+D R++ A +            +
Sbjct: 12  CLALAGVGSQVVAAEKSADGFMEGSTLSVLNRNFYFNRDNRDSVAPTHNPSKQADNGYSE 71

Query: 53  EWGQAFMFNYQSGFTEGTVGLGLDLQEWYGLRLDASGRAGKAGADNTPGSVFPLD-DGKA 111
            WG A +  ++SGFT+GTVG+GLD     GL+LD  G  G+ G  ++   V P+D DG+A
Sbjct: 72  AWGHAVITRFESGFTQGTVGVGLDAFAMLGLKLDTGG--GRNGGRSS-FDVLPVDRDGQA 128

Query: 112 VHDFSKTGVTGKLRIAQTQLKAGNLMPKLPVLTTEDGRLLPQTFRGYQVESKDFRDVNLI 171
             +++K G   KLR+  T LK G++ P  PV+   D RLLP++FRG  +E+   +D+ L 
Sbjct: 129 RDEYTKVGGAAKLRLFDTVLKVGDVFPANPVVAAGDSRLLPESFRGVTLENSSIKDLTLQ 188

Query: 172 AGKIEQVMDRNSSNGQGLSIAGANDPVKGKASNQFYYGGVDYAVSKRLQVQYYYASLENF 231
           AG++  +    SS+ +   +     PV    S    YGG DY +++ + V  + + L++ 
Sbjct: 189 AGRLHAMSQPMSSDLRENFVTFYGGPVD---SPWIAYGGGDYRLNEHVSVSLFSSRLKDA 245

Query: 232 YQQHFLGLVHNWQLPVG-QLKSDLRYFYSTADGKNGSVAGRGEGYVSSGYYGPGVNAGKV 290
           + Q++ G   +W L     L     Y+ +  +G+                       G  
Sbjct: 246 WNQYYAGTSLSWPLSEALALIGGFNYYKAVDEGQQ--------------------RLGAF 285

Query: 291 DNRLWSAMFTYALSGHSLSLGYQKTTGQSDFPHINQGQGRSLYLITNSQSLKFVNAGEQA 350
           DN +WSA        H+L+L +Q+  G  DF ++ Q    S++L  + Q   F    E++
Sbjct: 286 DNDIWSAKLGVRFGAHTLALTHQRNNGDDDFDYLRQSD--SIFLDNSIQYSDFNAPKERS 343

Query: 351 TVGSYAYDFAGLGVPGL---------------RSSVTYIHGSHIRTVGRDNSEWERDLRL 395
            +  Y  + A  GVPGL                ++ TY+          D   WERD+ +
Sbjct: 344 WMLRYDLNMAAYGVPGLSFMTRYGKGNDADYSNANATYMRRDVAGNPLTDQKRWERDIEV 403

Query: 396 DYVIPTGTLKGLGFTWRSAVLRGND-TADKDETRLIVSYSIPLM 438
            YV+ TG  K L    R A  R     +D DE R+IV Y + ++
Sbjct: 404 KYVVQTGAAKDLSLRVRQATTRATAFESDLDEVRMIVEYPLSIL 447