Pairwise Alignments

Query, 438 a.a., porin from Pseudomonas simiae WCS417

Subject, 449 a.a., putative OprD family outer membrane porin from Pseudomonas putida KT2440

 Score =  203 bits (516), Expect = 1e-56
 Identities = 153/470 (32%), Positives = 221/470 (47%), Gaps = 64/470 (13%)

Query: 3   HKTCLALAVSLGAAQQAAAS--GFIDDSKASLDLRNFYYNQDTRNA----------KAAS 50
           ++T L+LA+ L +   A +   GFID ++  +  RNF+++QD RN           + + 
Sbjct: 7   YRTALSLAILLASPAFADSDDEGFIDGTRVHVLNRNFFFSQDYRNGDFTLNPNNGERQSL 66

Query: 51  DKEWGQAFMFNYQSGFTEGTVGLGLDLQEWYGLRLDASGRA-----GKAGADNTPGSVFP 105
            +EWG   + N QSGFT GTVG G+D+Q   GL+LD    A     G  G  +  GS F 
Sbjct: 67  HREWGHGIIANLQSGFTRGTVGFGVDVQGLVGLKLDGGNGAVGNGVGVPGIVSRSGSNF- 125

Query: 106 LDDGKAVHDFSKTGVTGKLRIAQTQLKAGNLMPKLPVLTTEDGRLLPQTFRGYQVESKDF 165
             DG+    + K G   K+R   T+L+ G++ P  PVL   D RLLPQT RG+   +   
Sbjct: 126 --DGEPKDSYGKVGTALKVRAFDTELRYGDVSPTSPVLHASDIRLLPQTLRGFIFNNNSL 183

Query: 166 RDVNLIAGKIEQVMDRNSSNGQGLSIAGANDPVKGKASNQFYYGGVDYAVSKRLQVQYYY 225
             ++L  GK+E   DRN+SN +G    G     + K +N   Y G DY  + +L ++ + 
Sbjct: 184 DGLSLQGGKLESSSDRNASNHRG--DLGTVYAGRIKGANDVVYLGGDYRFNDQLTLRLHS 241

Query: 226 ASLENFYQQHFLGLVHNWQLPVG---QLKSDLRYFYSTADGKNGSVAGRGEGYVSSGYYG 282
           + L++ + Q F  + H    P+G    LK+ L Y+ +   G+                  
Sbjct: 242 SRLDDVWNQSFFSVDH--VQPLGSELSLKTGLNYYRTRDSGQ------------------ 281

Query: 283 PGVNAGKVDNRLWSAMFTYALSGHSLSLGYQKTTGQSDFPHINQGQGRSLYLITNSQSLK 342
               AG++DN  WS     A   H   L Y +  G + F ++       L L   SQ   
Sbjct: 282 --ALAGQIDNDSWSVHAGLAAGAHGFKLSYTRIDGDTPFDYV--WNTYDLQLDAASQVSD 337

Query: 343 FVNAGEQATVGSYAYDFAGLGVPGLRSSVTYIHGSHI---RTVG--------RDNSEWER 391
           F N  E+A    Y YDFA LGVPGL  +  Y+ G+ I   R  G         D   WER
Sbjct: 338 FNNPNERAWEARYDYDFAPLGVPGLSLTARYVRGTDIDGTRAGGAYSYFNGTEDGRHWER 397

Query: 392 DLRLDYVIPTGTLKGLGFTWRSAVLR--GNDTADK--DETRLIVSYSIPL 437
           +L L YV+ +G  K L F    A  R  G+  A+   DE RLIV Y + +
Sbjct: 398 NLWLKYVLQSGPAKDLSFNLMQATHRVGGDHVAESNVDELRLIVQYPLDI 447