Pairwise Alignments

Query, 438 a.a., porin from Pseudomonas simiae WCS417

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  208 bits (530), Expect = 2e-58
 Identities = 146/449 (32%), Positives = 220/449 (48%), Gaps = 53/449 (11%)

Query: 7   LALAVSLGAAQQAAAS------GFIDDSKASLDLRNFYYNQDTRNAKAASDK--EWGQAF 58
           +ALAVS G +Q A AS      GFI+DSK S+  R  Y+++D RN +    +  E G  F
Sbjct: 9   IALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREETGLGF 68

Query: 59  MFNYQSGFTEGTVGLGLDLQEWYGLRLDAS-GRAGKAGADNTPGSVFPL-DDGKAVHDFS 116
           +  ++SGFT+GTVG+G+D     GL+LD+  GRAG          +FP   DG++  D+S
Sbjct: 69  VGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTG--------LFPTGSDGRSQDDYS 120

Query: 117 KTGVTGKLRIAQTQLKAGNLMPKLPVLTTEDGRLLPQTFRGYQVESKDFRDVNLIAGKIE 176
           K G   K RI+ T LK G+    LPV  T+D RLLP+  +G  + S +   + L AG   
Sbjct: 121 KGGGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFT 180

Query: 177 QVMDRNSSNGQGLSIAGANDPVKGKASNQFYYGGVDYAVSKRLQVQYYYASLENFYQQHF 236
            +  +  +N     +  AN             GG  YA +  L    YY+ +E+++++++
Sbjct: 181 SLTAQEQTNRDSFGLKEAN-----------VVGGT-YAFTDNLSTSLYYSKVEDYWRKYY 228

Query: 237 LGLVHNWQLPVGQLKSDLRYFYSTADGKN-GSVAGRGEGYVSSGYYGPGVNAGKVDNRLW 295
             +  NW LP+      L + ++  D K+ GS   R              +  K+DNR +
Sbjct: 229 ANV--NWALPISD-NQGLVFDFNIYDTKSEGSAEYR------------AFDGDKLDNRAF 273

Query: 296 SAMFTYALSGHSLSLGYQKTTGQSDFPHINQGQGRSLYLITNSQSLKFVNAGEQATVGSY 355
           S    Y +  H+ +L YQK TG  D+ +   G G +++L  +     F    E++    Y
Sbjct: 274 SLSGAYNIGAHTFTLAYQKVTGDGDYGYGIDG-GGTIFLANSVARSDFNAEDEKSWQARY 332

Query: 356 AYDFAGLGVPGLRSSVTYIHGSHIRTVGRDN-SEWERDLRLDYVIPTGTLKGLGFTWRSA 414
             +FA  G+PGL     Y+ GS     G  N  EWERD+ + YV+  G  K L F  R A
Sbjct: 333 DLNFAEYGIPGLTFMTRYVRGSDANVAGTSNGKEWERDVDIKYVLQEGPAKDLSFRVRQA 392

Query: 415 VLRGN-----DTADKDETRLIVSYSIPLM 438
             R +     D+   DE RLIV Y + ++
Sbjct: 393 TYRSSDGVYYDSPSIDELRLIVEYPLSIL 421