Pairwise Alignments

Query, 438 a.a., porin from Pseudomonas simiae WCS417

Subject, 444 a.a., histidine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  197 bits (501), Expect = 6e-55
 Identities = 142/457 (31%), Positives = 214/457 (46%), Gaps = 55/457 (12%)

Query: 7   LALAVSLGAAQQA---AASGFIDDSKASLDLRNFYYNQDTRNAKAASDKEWGQAFMFNYQ 63
           +AL  ++  A QA    A GFI+ S  +L  RN Y+N+D  NA     +EWGQ  +  ++
Sbjct: 12  IALTATIPFAAQADEDKADGFIEGSSFNLHFRNAYFNRDNHNAGVRDTREWGQGAVARFE 71

Query: 64  SGFTEGTVGLGLDLQEWYGLRLDASGRAGKAGADNTPGSVFPLDDGK---AVHDFSKTGV 120
           SG+T G VG GLD     GL+LD  G  G AG    P  +   DDG+   A H FS  G 
Sbjct: 72  SGYTPGVVGFGLDAHAMLGLKLDGGG--GHAGTSILPEHI--KDDGELGAAPHSFSTAGA 127

Query: 121 TGKLRIAQTQLKAGNLMPKLPVLTTEDGRLLPQTFRGYQVESKDFRDVNLIAGKIEQVMD 180
             KL+   T+LKAG+L    PV+   + R+LPQTFRG  + +     + L  G++     
Sbjct: 128 AVKLKAFDTELKAGDLFLTNPVIAGGETRMLPQTFRGVSLTNTSIDGLLLEGGQVSFTHP 187

Query: 181 RNSSNGQGL-SIAGANDPVKGKASNQFYYGGVDYAVSKRLQVQYYYASLENFYQQHFLGL 239
            N S  + + +  G+ D  +   S    + G  ++ ++ +    Y A L++ + Q++   
Sbjct: 188 YNQSGHRRIDTYYGSLD--EHDKSKHLNWAGASWSGTEHITANLYAAELKDIWNQYYADF 245

Query: 240 VHNWQLPVGQLKSDLRYFYSTADGKNGSVAGRGEGYVSSGYYGPGVNAGKVDNRLWSAMF 299
            + + +      +   +FY T D         G+  +           GK+DN  +S  F
Sbjct: 246 DYTYVVNDLVSLNPGVHFYHTQD--------TGQALL-----------GKIDNNTYSVHF 286

Query: 300 TYALSGHSLSLGYQKTTGQSDFPHINQGQGRSLYLITNSQSLKFVNAGEQATVGSYAYDF 359
           T     HS++  YQ+  G + F +IN G   S+YL  +     F    E++    Y YDF
Sbjct: 287 TVNAGFHSVTAAYQRVNGNTPFDYINLGD--SVYLDNSRMYSDFNAPNERSWKLQYGYDF 344

Query: 360 AGLGVPGLRSSVTY--------------IHGSHIRTVGRDNSEWERDLRLDYVIPTGTLK 405
           AG+GVPGL +S++Y               H  + R  G++   WERDL + YV   G LK
Sbjct: 345 AGVGVPGLSTSLSYSRGEADLTKATQDTTHYDYYREDGKNAMHWERDLDVKYVFQEGDLK 404

Query: 406 GLGFTWRSAVLRG-------NDTADKDETRLIVSYSI 435
            L    R A  RG       +  +D DE R+IV Y +
Sbjct: 405 DLSVLVRYATHRGSQGYASIDSNSDNDELRVIVDYPL 441