Pairwise Alignments

Query, 438 a.a., porin from Pseudomonas simiae WCS417

Subject, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  186 bits (471), Expect = 2e-51
 Identities = 142/461 (30%), Positives = 207/461 (44%), Gaps = 71/461 (15%)

Query: 10  AVSLGAAQQAAASGFIDDSKASLDLRNFYYNQDTRNAKAASDKEWGQAFMFNYQSGFTEG 69
           A    A  QA + GFI+DS A++ LRN Y N+D ++       EWGQAF+ N+ SGFT+G
Sbjct: 16  ATQAQANDQADSKGFIEDSHANVLLRNAYINRDKKHG-TDDQIEWGQAFIANFSSGFTQG 74

Query: 70  TVGLGLDLQEWYGLRLDAS-GRAGKAGADNTPGSVFPLDDGKAV--HDFSKTGVTGKLRI 126
           TVG+G+D    Y +RLD   G  G  G D          +G A   H+ ++ G   K RI
Sbjct: 75  TVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAEGNASSPHNLARGGAAVKFRI 134

Query: 127 AQTQLKAGNLMPKLPVLTTEDGRLLPQTFRGYQVESKDFRDVNLIAGKIEQVMDRNSSNG 186
           + T LK G+ MP LPVL  +D RLLP++F G  + SK+ + + L AG+  Q   +++   
Sbjct: 135 SNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGLELNAGRFTQEARKSAERR 194

Query: 187 QGLSIAGANDPVKGKASNQFYYGGVDYAVSKRLQVQYYYASLENFYQQHFLGLVHNWQLP 246
            G  +   N             GG  Y  +       Y A  E+  ++H+LGL  N+  P
Sbjct: 195 DGGGLKSIN-----------VLGG-SYKFTDNFTASLYTADNEDVMKKHYLGL--NYVFP 240

Query: 247 VGQ----------LKSDLRYFYSTADGKNGSVAGRGEGYVSSGYYGPGVNAGKVDNRLWS 296
           +             KSD+   Y  A G NG                         N +WS
Sbjct: 241 IASDQSLTLDFNGYKSDINNKYVKAAGLNGD-----------------------SNTIWS 277

Query: 297 AMFTYALSGHSLSLGYQKTTGQSDFPH------INQGQGRSLYLITNSQSLKFVNAGEQA 350
              TYA   HS +L +Q++TG + + +         G G S   + NS    F    E++
Sbjct: 278 LAATYAYGAHSFTLAHQRSTGSTGYNYGFYQNAGGVGDGGSTIYLANSYWSDFNAEDERS 337

Query: 351 TVGSYAYDFAGLGVPGLRSSVTYIHGSHIRTVGRDNSEW-----ERDL--RLDYVIPTGT 403
               Y  DF   G+PGL   + Y+ G +I T    N +      ER++  ++ YV+  G 
Sbjct: 338 WQLGYGLDFGAYGIPGLTYKLAYVVGDNINTRNVANPQGFGEGKEREIFNQIRYVVQDGP 397

Query: 404 LKGLGFTWRSAVLRGNDTA-------DKDETRLIVSYSIPL 437
            K L    RS+ LR N+         D +E R+ V Y I +
Sbjct: 398 AKDLSIKLRSSFLRTNNAVQQNGYNDDGNEVRVFVEYPISI 438