Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1155 a.a., DNA polymerase III subunit alpha from Xanthobacter sp. DMC5

 Score =  347 bits (891), Expect = 2e-99
 Identities = 306/1054 (29%), Positives = 479/1054 (45%), Gaps = 100/1054 (9%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPLI 62
            +  LH  S++S   GA S  +L + AK     A+A+TD   L G +   +      +  I
Sbjct: 7    FIHLHVHSSYSLLEGALSVGKLADLAKADYQPAIALTDTGNLFGALEFSEKMSGSGIQPI 66

Query: 63   IGSEVRID-------------NGPKLVLLVEDLSGYQHLCRLITLA-RRRAEKGSYRLLR 108
             G  + +D               P++VLL +D +G+++L RL++ +    A +   R+L 
Sbjct: 67   PGVSLALDLPEPAGPRGGLRPRKPRVVLLAKDDAGWRNLMRLVSRSFLETASEDEPRILP 126

Query: 109  EDFDQPLPGLLALW-----------VAEDSDTQADS-QWLRRTFGERLWLAVHLHCGQND 156
            E   +   GL+ L            V    +  AD    L   FG+RL++ V  H    +
Sbjct: 127  EWLAEANDGLICLTGGPSGPLDRAIVGGHPEMAADRLDLLTSLFGDRLYVEVQRHGADPE 186

Query: 157  ARHLEQRLQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGER 216
                   L LA +  +P VA  +    A+      D + AI     ++E G R     E 
Sbjct: 187  RLAEPALLDLAYTKGVPLVAANEPFFAAKSDYEAHDGLLAIAEGRLLSE-GDRRRLTAEH 245

Query: 217  HLRSLDALAALY---PQPLLDETETIARRCTFDLSQLRYHYPHELVPAGHNAQ------- 266
              ++   +  L+   P+   +  E IA+RC + +  ++   P     A   A+       
Sbjct: 246  RFKTRAEMLELFADLPEATANTVE-IAKRCAYRVRTVKPILPR-FTTADEKAEGSDPLEA 303

Query: 267  --SWLRAVTEEGIAKRWPQ-----GVD-AKTAQQINSELELISELGYESYFLTVHDIVQF 318
              + L+   EEG+A R  +     G+D A    ++  E+ +I+++ +  YFL V D +++
Sbjct: 304  EAAELKRQAEEGLAARLAKHGPAPGLDEAAYHDRLAYEVSVITKMKFPGYFLIVSDFIKW 363

Query: 319  ARSRSI-LCQGRGSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDFEHER 377
            A++  I +  GRGS A S V Y+L IT++DP    +LFERFL+ +R   PD DVDF  ER
Sbjct: 364  AKAHDIPVGPGRGSGAGSLVAYSLQITDLDPLRFGLLFERFLNPDRVSMPDFDVDFCQER 423

Query: 378  REEVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKALGLPPDQINALADCCGRWSDAA 437
            R+EV++YV +RYGR + A      +  A G +RDV + L +P  Q++ L     +  + A
Sbjct: 424  RDEVIRYVQERYGRAQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQ--NPA 481

Query: 438  PPL-------DRLREGGFDPDSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLV 490
             P+       D  R         +++R   +  +L G  RH S H  G VI +  L  LV
Sbjct: 482  NPVTLKQAIEDEPRLQAARDQEEVVKRAFDIAVKLEGLNRHASTHAAGIVIGDRQLHELV 541

Query: 491  PVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRDLALATIP 550
            P+     ++  + Q++   ++  GL+K D L L  L+ I +   L+ + R  +L ++ IP
Sbjct: 542  PLYRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTIEKAVKLVHQ-RGIELDISKIP 600

Query: 551  KEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPIQGGMVHP 610
             +D  TY M+ K +T+GVFQ+ES      L  +K  +  D+V  VA+ RPGP+    +  
Sbjct: 601  LDDAKTYHMLGKGETVGVFQVESAGMRRALVDMKADRIEDIVALVALYRPGPMAN--IPV 658

Query: 611  YLRRRNKEEETTYPSPELKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMAAW 670
            Y   ++      Y  P L+  L+ T G+ ++QEQVMQIA   A Y  GEAD LRR+M   
Sbjct: 659  YCDCKHGRATPDYLHPMLEPYLKETFGVIIYQEQVMQIAQAMAGYSLGEADLLRRAMGK- 717

Query: 671  KRHGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWL 730
            K    +E  +ER  +G    G  +A A  IF+ +  F  YGF +SHAA++AL+ Y + WL
Sbjct: 718  KIRAEMEKQRERFVSGAAGRGIEKAQADTIFDLLAKFADYGFNKSHAAAYALVAYQTAWL 777

Query: 731  KCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGAQPA 790
            K + P  F  A +           +  Q+A+R  +++ P ++  S  +  ++  DG    
Sbjct: 778  KANYPTEFLAASMTLDKGNTDKLAEFRQEAQRLGIEVVPPNINLSAREFGVK--DG---K 832

Query: 791  IRMGLRMISGFREEDARRIEAARHRRAFSDIADLDDRAG---LDARAQALLADAGALRAL 847
            I   +  I G  E     + AAR  R F   AD   R     ++ R    L  AG    L
Sbjct: 833  IIYAMAAIKGVGEAAVEALVAARGDRPFRSFADFATRLPVKLVNKRTLESLMAAGCFDVL 892

Query: 848  AGNRHKA------------RWEVAGVHKQLGLFAGLPSPDEAVVELPSPTV-----GEDL 890
              NR +A            R E      Q  +F   P+   A   LP P        E L
Sbjct: 893  EKNRARAFAAIEPIVAEAQRVEANAQSGQNDMFGSGPA---AAASLPIPEASPWLPSERL 949

Query: 891  HADYATVGTTLGPHPLALLRAELRKRRCRSSQEL-MAVEHGRNVS-VAGLVTGRQRPGTA 948
              +Y ++G  L  HPL      L+K R +S  +   AV  G     +A  V  +Q   T 
Sbjct: 950  QKEYDSIGFFLTGHPLDDYAEALKKMRVQSFADFSRAVRSGAAAGRLAATVVSKQERRTK 1009

Query: 949  SG--VTFVTLEDEFGNLNVVV-------WRDLAE 973
            SG  +  V L D  G+   V+       +RDL E
Sbjct: 1010 SGTRMGIVGLSDPSGHYEAVIFSEGLAHYRDLLE 1043