Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

 Score =  362 bits (928), Expect = e-103
 Identities = 304/1083 (28%), Positives = 499/1083 (46%), Gaps = 115/1083 (10%)

Query: 2    SYAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPL 61
            S+  L   + +S   G      L +        A+A+TD+  +  +V+ ++ A    +  
Sbjct: 4    SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKP 63

Query: 62   IIGSEVRIDNGP------KLVLLVEDLSGYQHLCRLITLARRRAEK-GSYRLLREDFDQP 114
            I G+++ + N        ++ LL  +  GY++L  LI+      ++ GS  + RE   + 
Sbjct: 64   ICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEA 123

Query: 115  LPGLLALWVAEDSDT----------QAD---SQWLRRTFGERLWLAVHLHCGQNDARHLE 161
              GL+ L  A++ +           +A+    +W++  F +R +L V      ND  HL 
Sbjct: 124  SEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQ-VFPDRFYLEVQRTNRPNDEEHLH 182

Query: 162  QRLQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSL 221
              + LA  L  P VA  DV    +      +T   I     + +     + + E++L+S 
Sbjct: 183  AAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSA 242

Query: 222  DALAALY---PQPLLDETETIARRCTFDLSQLRYHYPHELVPAGHNAQSWLRAVTEEGIA 278
            + +A L+   P+ L +  E IA+RC  ++   ++  P+  +P G     + R V+ +G+ 
Sbjct: 243  EEMAELFSDLPEALENSVE-IAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLE 301

Query: 279  KRWPQGVDAKTAQ-----------QINSELELISELGYESYFLTVHDIVQFARSRSI-LC 326
            +R    +   T +           ++N EL++I ++G+  YFL V D +Q+A++  + + 
Sbjct: 302  ERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVG 361

Query: 327  QGRGSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDFEHERREEVLQYVF 386
             GRGS A S V Y   IT++DP    +LFERFL+ ER   PD DVDF  + R+ V++YV 
Sbjct: 362  PGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVA 421

Query: 387  QRYGRTRAALTAVVSSYHASGAVRDVAKALGLPPDQINALADCCGRWSDAAP-PLDRLRE 445
            ++YGR   +      S  A   +RDVA+  G    +   LAD   R S   P  +    E
Sbjct: 422  EKYGRNAVSQIITFGSMAAKAVIRDVARVQG----KSYGLAD---RLSKMIPFEVGMTLE 474

Query: 446  GGFDPDSPILR----------RVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPVENA 495
              ++ +  ILR           +  + ++L G  R++ +H GG VI+   L    P+   
Sbjct: 475  KAYEQEE-ILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCD 533

Query: 496  AMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHR----NRDLALATIPK 551
                  + Q+DKDD++A GL+K D L L  L+ I      + R R       L +A IP 
Sbjct: 534  EEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPL 593

Query: 552  EDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPIQGGMVHPY 611
            +D  TY ++ KA+T  VFQ+ESR    ++ +LKP    DL+  VA+ RPGP+Q GMV  +
Sbjct: 594  DDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDF 653

Query: 612  LRRRNKEEETTYPSPE-----LKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQLRRS 666
            + R++   E  YP  +     LK VL  T GI L+QEQVMQIA V A Y  G AD LRR+
Sbjct: 654  INRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRA 713

Query: 667  MAAWKRHGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFALLTYA 726
            M   K+   +   +     G   N      A  IF+ ++ F  YGF +SH+A++ L++Y 
Sbjct: 714  MGK-KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQ 772

Query: 727  SCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDG 786
            + WLK H PA F  A++++          ++++ R  +L++   DV AS++  ++     
Sbjct: 773  TAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVND--- 829

Query: 787  AQPAIRMGLRMISGFREEDARRIEAARHRRAFSDIADLDDRAGL---DARAQALLADAGA 843
             +  I  GL  I G  E     I  AR    F D+ D   R  L   + R    L  +GA
Sbjct: 830  -EGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGA 888

Query: 844  LRALAGNRH-------------------------KARWEVAGVHK--QLGLFAGLPSPDE 876
            L  L    H                         KA  + A  H      LF GL   ++
Sbjct: 889  LDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEED 948

Query: 877  AVV-----ELPSPTVGEDLHADYATVGTTLGPHPLALLRAELRKRRCRSSQELMAVEHGR 931
            A V     +    T+ E L  +  T+G  L  HP+     E+R+    + Q ++ ++  R
Sbjct: 949  ADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRR---FARQRIIDLKPAR 1005

Query: 932  NV-SVAGLVTG----RQRPGTASGVTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLMK 986
            +  +VAG++      + + G   G  F+TL+D  G +   ++ D     +  L    ++ 
Sbjct: 1006 DTQTVAGMIIALRVMKNKKGDKMG--FITLDDRSGRIEASLFADAFHSAQSLLQTDAMVV 1063

Query: 987  VDG 989
            V+G
Sbjct: 1064 VEG 1066