Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1105 a.a., Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7) from Sphingobium sp. HT1-2

 Score =  900 bits (2325), Expect = 0.0
 Identities = 492/1036 (47%), Positives = 654/1036 (63%), Gaps = 22/1036 (2%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPLI 62
            Y EL   ++FSF RGASS  +LF  A      AL + D  +++GIVRAW A +   +  I
Sbjct: 8    YVELQVTTHFSFLRGASSPEDLFATAAAMEMPALGVVDRHSVAGIVRAWDAERQTGVRAI 67

Query: 63   IGSEVRIDNGPKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLREDFDQPLPGLLALW 122
            +G  + + +G  L++   D + Y  LCRL+++ + RA KG+  L   D      GLLA+ 
Sbjct: 68   VGCRLDLTDGTALLVYPTDKAAYGRLCRLLSIGKTRAGKGACHLDWSDVADWNEGLLAML 127

Query: 123  VAE--DSDTQADSQWLRRTFGERLWLAVHLHCGQNDARHLEQRLQLAASLHLPAVACGDV 180
            V +  D+ TQA     +R FGER ++A+ +     DA  L    ++AA+  +P +A  DV
Sbjct: 128  VPDRADATTQAALARTKRLFGERTYMALSVRRRPKDAIRLRDLSRIAAAAGVPTIATNDV 187

Query: 181  HMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDALAALYPQPLLDETET-- 238
              H   RR LQD +T IR    +   G       +R+L++   +  L+ + L D +    
Sbjct: 188  LYHVPERRQLQDVVTCIREKCTIDTLGRTRERFADRYLKTGAEMTRLFRRYLKDSSPVAR 247

Query: 239  ---IARRCTFDLSQLRYHYPHELVPAGHNAQSWLRAVTEEGIAKRWPQGVDAKTAQQINS 295
                ARRC F L +L+Y YP E+   G   Q  L  +T E    R+PQGVD K  +Q+  
Sbjct: 248  SVEFARRCAFSLDELKYQYPDEIQVPGRTPQEELERLTWEKAPMRYPQGVDDKVRRQLEH 307

Query: 296  ELELISELGYESYFLTVHDIVQFARSRSILCQGRGSAANSAVCYALGITEIDPSLTSMLF 355
            EL+LI +L Y  YFLTVH IV  AR R ILCQGRGSAANSAVCY LGIT IDP  + +LF
Sbjct: 308  ELQLIGQLDYAPYFLTVHAIVAEARRREILCQGRGSAANSAVCYVLGITSIDPVRSELLF 367

Query: 356  ERFLSRERNEPPDIDVDFEHERREEVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKA 415
            ERF+S ER EPPDIDVDFEHERREEV+Q++++ YGRTR+ALTAVV+ + A GAVR+V KA
Sbjct: 368  ERFVSAERREPPDIDVDFEHERREEVIQWIYETYGRTRSALTAVVTRFRARGAVREVGKA 427

Query: 416  LGLPPDQINALADCCGRWSDAAPPLDRLREGGFDPDSPILRRVLTLTQQLIGFPRHLSQH 475
            LGL  D    LA     +S         +E   D     L   L L +QLI  PRHLSQH
Sbjct: 428  LGLSEDVTAGLAGAIWGYSREGVEEKHAQELNLDLSDTRLALTLDLARQLIDTPRHLSQH 487

Query: 476  PGGFVISEYPLDTLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDL 535
            PGGFV++   LD LVP+E AAM +R +I+WDKDD+D +G +KVD+LALGMLS +RR F+ 
Sbjct: 488  PGGFVLTRDRLDELVPIEPAAMDDRQVIEWDKDDIDLLGFMKVDVLALGMLSCMRRAFEF 547

Query: 536  LRRHRNRDLALATIPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEV 595
            L   +     LATIP EDPATYAMI +ADT+GVFQIESRAQM+ +P + P+ FYDLVI+V
Sbjct: 548  LENDKGLRHDLATIPAEDPATYAMIRRADTLGVFQIESRAQMASIPLMAPKTFYDLVIQV 607

Query: 596  AIVRPGPIQGGMVHPYLRRRNKEEETTYPSPELKVVLERTLGIPLFQEQVMQIAMVAADY 655
            AIVRPGPIQG MVHPY RRRN EEE TYP+ EL+ VLE+TLG+PLFQEQ M++A+  A +
Sbjct: 608  AIVRPGPIQGDMVHPYRRRRNGEEEVTYPTEELRRVLEKTLGVPLFQEQAMRVAIECAGF 667

Query: 656  GPGEADQLRRSMAAWKRHGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPES 715
               EAD LRR+MA +K  GG+   +++L +GM+  GY + FA + F+QI+GFGSYGFPES
Sbjct: 668  TASEADLLRRAMATFKLTGGVSDFRDKLISGMVSRGYDQEFAEKTFKQIEGFGSYGFPES 727

Query: 716  HAASFALLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQAS 775
            HAASFAL+ YAS W+KCH P AF  +L+N+ PMGFY+P QI++DAR H ++IRP+DV AS
Sbjct: 728  HAASFALIAYASSWMKCHHPDAFCASLLNAQPMGFYAPAQIVRDAREHGVEIRPIDVNAS 787

Query: 776  DWDCSLEPIDGAQPAIRMGLRMISGFREEDARRIEAARHRRAFSDIADLDDRAGLDARAQ 835
             WDC+LE   G   A+R+GLRM       DA  I  AR  R F+ I ++  RAG+   A 
Sbjct: 788  RWDCTLEEGRGRYKAVRLGLRMARDLANADAAAIVTARGDRPFTSIEEIQQRAGVGRGAL 847

Query: 836  ALLADAGALRALAGNRHKARWEVAGV-HKQLGLFAGLPSPDEAVVELP----SPTV---- 886
              + DA    +L  +R    W V G+ +  L LFA   + DE   +L      PTV    
Sbjct: 848  DRIGDADGFGSLGADRRSGLWAVKGLGNAALPLFA---AADERAGKLREEAIEPTVILAE 904

Query: 887  ---GEDLHADYATVGTTLGPHPLALLRAELRKRRCRSSQELMAVEHGRNVSVAGLVTGRQ 943
               G ++  DY   G +L  HP+A LR EL+ RR  + ++L     GR + +AGLV  RQ
Sbjct: 905  MGEGAEVVEDYRASGLSLRAHPVAFLREELKARRMITCEQLRTTRDGRWIELAGLVLVRQ 964

Query: 944  RPGTASGVTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLMKVDGRWEAVGEVRHLIAG 1003
            +PG+A GV F+TLEDE    N+VVW ++ E+ R+ ++G+ +M V G+ +  GEV H+IA 
Sbjct: 965  KPGSAKGVMFITLEDETDLANLVVWTNVFEKNRRTVLGASMMGVRGQVQREGEVIHVIAQ 1024

Query: 1004 RLTDLTPLLEGITVRS 1019
            RL DL+ +L  +  R+
Sbjct: 1025 RLDDLSGMLASVGRRA 1040