Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1180 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Sphingobium sp. HT1-2

 Score =  337 bits (863), Expect = 4e-96
 Identities = 291/994 (29%), Positives = 454/994 (45%), Gaps = 75/994 (7%)

Query: 2   SYAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPL 61
           ++  L   S+F+   GA    ++ ++AK  G+ A AITD   L G +      K   +  
Sbjct: 5   AFVPLRIFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDGCKGEGVQP 64

Query: 62  IIGSEV------RIDNGPK----LVLLVEDLSGYQHLCRLITLAR--RRAEKGSYRLL-- 107
           I+G+ +      R  N P     + L  +D  GY ++C L+++A   R  E+  +  L  
Sbjct: 65  IVGAMLGVVRPGRPSNAPAVHDWIALYAQDAGGYDNICALVSMAHLDRPLEEVPHVTLDM 124

Query: 108 ---REDFDQPLP----GLLALWVAEDSDTQA--DSQWLRRTFGERLWLAVHLHCGQNDAR 158
              R D    L     G +A   AED    A   +  L+  F +RL++ +       + +
Sbjct: 125 LEGRTDGVIALTAGGEGAIARLFAEDQPDAALAYADRLQALFPDRLYVEICRRLDPVEGK 184

Query: 159 HLEQRLQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHL 218
              Q L LA   +LP VA            A  D M  I     V E   R   + +  +
Sbjct: 185 AEPQLLDLAYDRNLPLVATNPTCFAEPEFHAAHDVMLCIADGAYV-ETPDRRTSSPDAWM 243

Query: 219 RSLDALAALYPQ--PLLDETETIARRCTFDLSQLRYHYPHELVPAGHNAQSWLRAVTEEG 276
           +    +  L+      L  T  +A+RC     + +   P  L          LR  +  G
Sbjct: 244 KPAAEMKRLFEDLPEALANTLVVAQRCAVMAPKRKPILP-SLAGDIEGEGIMLRDQSIAG 302

Query: 277 IAKRWPQ-GVDAKTAQQ-----INSELELISELGYESYFLTVHDIVQFARSRSI-LCQGR 329
           +  R  + G+ A  A+Q     +  E+++I ++G+  YFL V D +++A+   I +  GR
Sbjct: 303 LEARLEKAGIIADEARQPYFERLKFEMDIIIQMGFPGYFLIVADFIKWAKDHDIPVGPGR 362

Query: 330 GSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDFEHERREEVLQYVFQRY 389
           GS A S V +AL IT++DP    +LFERFL+ ER   PD D+DF   RR EV++YV Q+Y
Sbjct: 363 GSGAGSLVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQQKY 422

Query: 390 GRTRAALTAVVSSYHASGAVRDVAKALGLPPDQINALADCCGRWSDAAPPLDRLREG--- 446
           G    A         A   ++D  + + +   Q++ LA            L+R   G   
Sbjct: 423 GSDHVAQIITFGKLKARAVLKDTGRVMQMSYGQVDRLAKLVPNHPTDPWTLERSLNGVAE 482

Query: 447 ---GFDPDSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPVENAAMAERTII 503
               +D D+ + +R++    +L GFPRH S H  G VI + PL  LVP+     ++  + 
Sbjct: 483 FKAEYDNDNQV-KRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYRDPRSDMPVT 541

Query: 504 QWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRDLALATIPKEDPATYAMISKA 563
           Q+D   ++  GL+K D L L  LS +++   LL + R   + L T+  +D   Y ++ + 
Sbjct: 542 QFDMKFVEGAGLVKFDFLGLKTLSVLQKAVQLL-KGRGVTVDLDTLAWDDAKVYELLQRG 600

Query: 564 DTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPIQGGMVHPYLRRRNKEEETTY 623
           DT+GVFQ+ES      L  ++P  F D++  V++ RPGP+    +  + RR+N +EE  Y
Sbjct: 601 DTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDN--IPMFGRRKNGQEEIEY 658

Query: 624 PSPELKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMAAWKRHGGLEPHQERL 683
           P   LK +LE T GI ++QEQVMQ A + A Y  G+AD LRR+M   K    ++  + R 
Sbjct: 659 PHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGK-KIKAEMDAQRLRF 717

Query: 684 RTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFACALI 743
             G  K+    A A ++F+ I  F  YGF +SHAA++ALL Y + WLK H PA F     
Sbjct: 718 VEGCAKSDIKPAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAEF---YA 774

Query: 744 NSWPMGFYSPDQI---LQDARRHRLQIRPVDVQASDWDCSLE--PIDGAQP----AIRMG 794
            S     +  +++   + D RR  +   P D+  S+ D ++E  P +G  P    A+R  
Sbjct: 775 GSMAFDIHLTEKLTVFVDDMRRMGMTCLPPDLNQSEADFTVEAVPFEGDDPRLGFAVRYA 834

Query: 795 LRMISGFREEDARRIEAARHRRA-FSDIADLDDRAG---LDARAQALLADAGALRALAGN 850
           L  + G  E+   ++ A R     F  + DL DR     L+ R    LA AGA   +  +
Sbjct: 835 LGGLKGVGEKAMEQLVAEREANGPFKHLDDLADRIEPRLLNRRQLESLAAAGAFDTIHAD 894

Query: 851 R---HKARWEVAGV---------HKQLGLFAGLPSPDEAVVELPSP--TVGEDLHADYAT 896
           R   H A   +  V           Q GLF  + +  E V   P    TV + +  +   
Sbjct: 895 RAGVHAAAETLLSVAASAAQARESGQGGLFGDVETAHEDVRIPPHQAWTVSDRMAQEKEA 954

Query: 897 VGTTLGPHPLALLRAELRKRRCRSSQELMAVEHG 930
            G     HP+   R     R  +S  E+ +   G
Sbjct: 955 FGFYFSAHPVDRFRHLADARGAKSYGEICSQPMG 988