Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

 Score =  350 bits (897), Expect = e-100
 Identities = 294/1080 (27%), Positives = 486/1080 (45%), Gaps = 110/1080 (10%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPLI 62
            +  L   S FS   G      L +        A+AITD+  +  +V+ ++ A    +  I
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 63   IGSEVRIDNGP------KLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLREDFDQPLP 116
             G+++ +          ++  L  D  GY++L  LI+      ++    +L+ ++  P  
Sbjct: 65   CGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWIAPAS 124

Query: 117  -GLLALWVAEDSDT--------QADSQWLRRT----FGERLWLAVHLHCGQNDARHLEQR 163
             GL+AL   ++ D         Q +++ L +     F ER ++ V       D  ++   
Sbjct: 125  EGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEEYVHAA 184

Query: 164  LQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDA 223
            + LA  L  P VA  DV    +      +T   I     + +       + +++L+S + 
Sbjct: 185  VALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLKSAEE 244

Query: 224  LAALYPQ--PLLDETETIARRCTFDLSQLRYHYPHELVPAGHNAQSWLRAVTEEGIAKR- 280
            +A L+      +  T  IA+RC   +   +Y  P    P G     +LR V  EG+ +R 
Sbjct: 245  MAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEGLEERL 304

Query: 281  ---WPQGVDAKTAQQ-------INSELELISELGYESYFLTVHDIVQFARSRSI-LCQGR 329
               WP+       ++       +  EL++I ++G+  YFL V D +++A++  + +  GR
Sbjct: 305  AVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVGPGR 364

Query: 330  GSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDFEHERREEVLQYVFQRY 389
            GS A S V Y L IT++DP    +LFERFL+ ER   PD DVDF  + R+ V+ YV + Y
Sbjct: 365  GSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAEAY 424

Query: 390  GRTRAALTAVVSSYHASGAVRDVA----KALGLPPDQINALADCCGRWSDAAPPLDRLRE 445
            GR   +      +  A   VRDVA    K+ GL       +    G   + A   + +  
Sbjct: 425  GRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484

Query: 446  GGFDPDSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPVENAAMAERTIIQW 505
                 D    R +  +  +L G  R   +H GG VI+   L    P+         + Q+
Sbjct: 485  DFLKGDED-AREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLVTQF 543

Query: 506  DKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNR----DLALATIPKEDPATYAMIS 561
            DKDD++A GL+K D L L  L+ I+   +++ R + +    DL +  IP +D  TY ++ 
Sbjct: 544  DKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYELLQ 603

Query: 562  KADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPIQGGMVHPYLRRRNKEEET 621
            KA+T  VFQ+ESR    ++ +LKP    DL+  VA+ RPGP+Q GMV  ++ R++   E 
Sbjct: 604  KAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAEL 663

Query: 622  TYPSPE-----LKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMAAWKRHGGL 676
             YP  +     LK VL  T GI L+QEQVMQIA V A Y  G AD LRR+M   K+   +
Sbjct: 664  AYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPEEM 722

Query: 677  EPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPA 736
               +     G + N      A  IF+ ++ F  YGF +SH+A++ L++Y + WLK H PA
Sbjct: 723  AKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPA 782

Query: 737  AFACALINSWPMGFYSPDQI---LQDARRHRLQIRPVDVQASDWDCSLEPIDGAQPAIRM 793
             F  A++++     ++ D++   +++ R  +L++   DV  SD+  ++   DG    I  
Sbjct: 783  PFMAAVLSA---DMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNN-DG---RIVY 835

Query: 794  GLRMISGFREEDARRIEAARHRRA-FSDIADLDDRAGL---DARAQALLADAGALRALAG 849
            GL  I G  E     I  AR +   F D+ D  +R  L   + R    L  +GAL  L  
Sbjct: 836  GLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGP 895

Query: 850  NRHKARWEVAGVHKQL---------GLFAGLPSPDEAVVELPSP---------------- 884
            + H    E+   H  +          L   + + ++A     S                 
Sbjct: 896  HFHD---EIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDV 952

Query: 885  ----------TVGEDLHADYATVGTTLGPHPLALLRAELRKRRCRSSQELMAVEHGRNV- 933
                      T+ E L  +  T+G  L  HP+     E+R+    + Q ++ ++  R   
Sbjct: 953  YANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRR---FARQRIVDLKPSRETQ 1009

Query: 934  SVAGLVTG----RQRPGTASGVTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLMKVDG 989
            ++AG++      + + G   G  FVTL+D  G +   ++ D     +  L    ++ V+G
Sbjct: 1010 TIAGMIIALRVMKNKKGDKMG--FVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEG 1067