Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1160 a.a., DNA-directed DNA polymerase III (polc) from Enterobacter asburiae PDN3

 Score =  359 bits (922), Expect = e-103
 Identities = 298/1061 (28%), Positives = 496/1061 (46%), Gaps = 86/1061 (8%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPLI 62
            +  L   S++S   G +    L ++A   G  ALAITD   L G+V+ +  A    +  I
Sbjct: 6    FVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGAGIKPI 65

Query: 63   IGSEVRI------DNGPKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLREDFDQPL- 115
            +G++  +      D   ++ +L  + +GYQ+L  LI+ A +R        +  D+   L 
Sbjct: 66   VGADFHVQSDLIGDEMTQISVLAMNNTGYQNLTLLISKAYQRGYGALGPWIDRDWLAELN 125

Query: 116  PGLLALWVAEDSDT-----QADS-------QWLRRTFGERLWLAVHLHCGQNDARHLEQR 163
             GLL +      D      + +S        +    F +R +L +     Q++  +L   
Sbjct: 126  EGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEYFPDRYYLELIRTGRQDEESYLHAA 185

Query: 164  LQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDA 223
            + LA    LP VA  DV     G     +   AI     + +     + + ++++RS + 
Sbjct: 186  VALAEERGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYMRSEEE 245

Query: 224  LAALY---PQPLLDETETIARRCTFDLSQLRYHYPHELVPAGH-NAQSWLRAVTEEGIAK 279
            +  L+   P+ L +  E IA+RC   +    Y  P    P G    + +L   ++EG+ +
Sbjct: 246  MCELFSDIPEALENSVE-IAKRCNVTVRLGEYFLPQ--FPTGDMTTEDFLVVKSKEGLEE 302

Query: 280  R----WPQGVDAKTA-----QQINSELELISELGYESYFLTVHDIVQFARSRSI-LCQGR 329
            R    +P     K       ++++ EL++I+++G+  YFL V + +Q+++   + +  GR
Sbjct: 303  RLEFLFPDEAVRKEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362

Query: 330  GSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDFEHERREEVLQYVFQRY 389
            GS A S V YAL IT++DP    +LFERFL+ ER   PD DVDF  E+R++V+++V   Y
Sbjct: 363  GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422

Query: 390  GRTRAALTAVVSSYHASGAVRDVAKALGLP---PDQINALAD-----CCGRWSDAAPPLD 441
            GR   +      +  A   +RDV + LG P    D+I+ L          +  +A P L 
Sbjct: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQLP 482

Query: 442  RLREGGFDPDSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPVENAAMAERT 501
             + E   +     ++ ++ + ++L G  R+  +H GG VI+   +    P+      E  
Sbjct: 483  EIYEADEE-----VKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGEHP 537

Query: 502  IIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRD----LALATIPKEDPATY 557
            + Q+DK+D++  GL+K D L L  L+ I     ++   R +     + +A IP +D  ++
Sbjct: 538  VTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLEPIDIAAIPLDDKKSF 597

Query: 558  AMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPIQGGMVHPYLRRRNK 617
             M+ +++T  VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q GMV  ++ R++ 
Sbjct: 598  DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657

Query: 618  EEETTYPSPE-----LKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMAAWKR 672
             EE +YP  +     LK VLE T GI L+QEQVMQIA V + Y  G AD LRR+M   K+
Sbjct: 658  REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KK 716

Query: 673  HGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKC 732
               +   +     G  KNG     A +IF+ ++ F  YGF +SH+A++AL++Y + WLK 
Sbjct: 717  PEEMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776

Query: 733  HEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGAQPAIR 792
            H PA F  A++ +          ++ +  R  L+I P D+ +  +   +   DG    I 
Sbjct: 777  HYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVND-DG---EIV 832

Query: 793  MGLRMISGFREEDARRIEAARHR----RAFSDIADLDDRAGLDARAQALLADAGALRALA 848
             G+  I G  E     I  AR+     R   D+    D   L+ R    L  +GA   L 
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLG 892

Query: 849  GNR---------------HKARWEVAGVHKQLGLFAGLPSPDEAVVELPSPTVGE-DLHA 892
             +R                 A+ E  G     G+ A  P   E       P   +  L  
Sbjct: 893  PHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYSNCQPWPEQVVLDG 952

Query: 893  DYATVGTTLGPHPLALLRAEL-RKRRCRSSQELMAVEHGRNVSVAGLVTGRQRPGTASG- 950
            +  T+G  L  HP+     E+ R       +++   E G+  + AGLV   +   T  G 
Sbjct: 953  ERETLGLYLTGHPINQYIKEIERYVGGHRLKDMHPTERGKITTAAGLVIAARVMVTKRGN 1012

Query: 951  -VTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLMKVDGR 990
             +   TL+D  G L V+++ D  ++ +Q L   R++ V G+
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQ 1053