Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1160 a.a., DNA polymerase III subunit alpha from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  363 bits (933), Expect = e-104
 Identities = 297/1072 (27%), Positives = 499/1072 (46%), Gaps = 108/1072 (10%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPLI 62
            +  L   S++S   G +    L ++A   G  ALAITD   L G+V+ + A     +  I
Sbjct: 6    FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65

Query: 63   IGSEVRI------DNGPKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLREDFDQPL- 115
            +G++  +      D    L +L  + +GYQ+L  LI+ A +R    +  ++  D+   L 
Sbjct: 66   VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125

Query: 116  PGLLALWVAEDSDTQADS------------QWLRRTFGERLWLAVHLHCGQNDARHLEQR 163
             GL+ L      D                  +    F +R +L +      ++  +L   
Sbjct: 126  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185

Query: 164  LQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDA 223
            ++LA +  LP VA  DV           +   AI     + +     + + ++++RS + 
Sbjct: 186  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245

Query: 224  LAALY---PQPLLDETETIARRCTFDLSQLRYHYPHELVPAGHNAQSWLRAVTEEGIAKR 280
            +  L+   P+ L +  E IA+RC   +    Y  P    P G  +       TE+ + KR
Sbjct: 246  MCELFADIPEALANTVE-IAKRCNVTVRLGEYFLPQ--FPTGDMS-------TEDYLVKR 295

Query: 281  WPQGVDAKTA-----------------QQINSELELISELGYESYFLTVHDIVQFARSRS 323
              +G++ + A                 +++ +EL++I+++G+  YFL V + +Q+++   
Sbjct: 296  AKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNG 355

Query: 324  I-LCQGRGSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDFEHERREEVL 382
            + +  GRGS A S V YAL IT++DP    +LFERFL+ ER   PD DVDF  E+R++V+
Sbjct: 356  VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 415

Query: 383  QYVFQRYGRTRAALTAVVSSYHASGAVRDVAKALG------------LPPDQINALADCC 430
            ++V   YGR   +      +  A   +RDV + LG            +PPD    LA   
Sbjct: 416  EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLA--- 472

Query: 431  GRWSDAAPPLDRLREGGFDPDSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLV 490
             +  +A P L  + E   +     ++ ++ + ++L G  R+  +H GG VI+   +    
Sbjct: 473  -KAFEAEPQLPEIYEADEE-----VKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 526

Query: 491  PVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRD----LAL 546
            P+      +  + Q+DK D++  GL+K D L L  L+ I    +++ + R ++    L +
Sbjct: 527  PLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDI 586

Query: 547  ATIPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPIQGG 606
            A IP +D  ++ M+ +++T  VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q G
Sbjct: 587  AAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646

Query: 607  MVHPYLRRRNKEEETTYPSPE-----LKVVLERTLGIPLFQEQVMQIAMVAADYGPGEAD 661
            MV  ++ R++  EE +YP  +     LK VLE T GI L+QEQVMQIA V + Y  G AD
Sbjct: 647  MVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 662  QLRRSMAAWKRHGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFA 721
             LRR+M   K+   +   +     G  KNG +   A +IF+ ++ F  YGF +SH+A++A
Sbjct: 707  MLRRAMGK-KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 765

Query: 722  LLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSL 781
            L++Y + WLK H PA F  A++ +          ++ +  R  L+I P D+ +  +   +
Sbjct: 766  LVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHV 825

Query: 782  EPIDGAQPAIRMGLRMISGFREEDARRIEAARHR----RAFSDIADLDDRAGLDARAQAL 837
               DG    I  G+  I G  E     I  AR++    R   D+    D   L+ R    
Sbjct: 826  ND-DG---EIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEK 881

Query: 838  LADAGALRALAGNR---------------HKARWEVAGVHKQLGLFAGLPSPDEAVVELP 882
            L  +GA   L  +R                 A+ E  G     G+ A  P   E      
Sbjct: 882  LIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASC 941

Query: 883  SPTVGE-DLHADYATVGTTLGPHPLALLRAEL-RKRRCRSSQELMAVEHGRNVSVAGLVT 940
             P   +  L  +  T+G  L  HP+     E+ R       +++   E G+ ++ AGLV 
Sbjct: 942  QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVV 1001

Query: 941  GRQRPGTASG--VTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLMKVDGR 990
              +   T  G  +   TL+D  G L V+++ D  ++ +Q L   R++ V G+
Sbjct: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQ 1053