Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1160 a.a., DNA polymerase III subunit alpha from Dickeya dadantii 3937

 Score =  342 bits (877), Expect = 9e-98
 Identities = 293/1061 (27%), Positives = 491/1061 (46%), Gaps = 86/1061 (8%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPLI 62
            +  L   S++S   G +    L ++A   G  ALAITD   L G+V+ +  A    +  I
Sbjct: 6    FVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIKPI 65

Query: 63   IGSEVRI------DNGPKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLL-REDFDQPL 115
            IG++  +      D    L +L  +  GYQ+L  LI+ A +R        + R    +  
Sbjct: 66   IGADFYLQSEELGDELAHLTILAMNNEGYQNLTLLISRAYQRGYGADGPTIDRAWLVEHQ 125

Query: 116  PGLLALWVAEDSD------------TQADSQWLRRTFGERLWLAVHLHCGQNDARHLEQR 163
             GLL L      D             +    + ++ F +R +L +      ++  +L   
Sbjct: 126  AGLLLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYLELVRTGRPDEESYLHAA 185

Query: 164  LQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDA 223
            ++LA +  LP VA  DV   ++      +   AI     + +     + + ++++RS + 
Sbjct: 186  VELATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDPKRPKNYSVQQYMRSEEE 245

Query: 224  LAALY---PQPLLDETETIARRCTFDLSQLRYHYPHELVPAGH-NAQSWLRAVTEEGIAK 279
            +  L+   P+ L++  E IA+RC   +    Y  P    P G  + + +L   +++G+ +
Sbjct: 246  MCELFADIPEALINTVE-IAKRCNVTIRLGEYFLPQ--FPTGDMSTEDYLVMCSKKGLEE 302

Query: 280  RWP-----QGVDAKTA----QQINSELELISELGYESYFLTVHDIVQFARSRSI-LCQGR 329
            R       + V A+      +++  EL +I+++G+  YFL V + +Q+++   + +  GR
Sbjct: 303  RLTFLFPDEEVRAQRRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNDVPVGPGR 362

Query: 330  GSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDFEHERREEVLQYVFQRY 389
            GS A S V YAL IT++DP    +LFERFL+ ER   PD DVDF  E+R+ V+ +V   Y
Sbjct: 363  GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVADMY 422

Query: 390  GRTRAALTAVVSSYHASGAVRDVAKALGLP---PDQINALAD-----CCGRWSDAAPPLD 441
            GR   +      +  A   +RDV + LG P    D+I+ L          +   A P L 
Sbjct: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQLG 482

Query: 442  RLREGGFDPDSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPVENAAMAERT 501
             + E   +     ++ ++ + ++L G  R+  +H GG VIS   +    P+         
Sbjct: 483  EIYEADEE-----VKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGNHP 537

Query: 502  IIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRD----LALATIPKEDPATY 557
            + Q+DK D++  GL+K D L L  L+ I    +++   R +     + +A IP +D  ++
Sbjct: 538  VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQELEPIDIAAIPLDDKKSF 597

Query: 558  AMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPIQGGMVHPYLRRRNK 617
             M+ +++T  VFQ+ESR    ++ RLKP  F D++  VA+ RPGP+Q GMV  ++ R++ 
Sbjct: 598  DMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657

Query: 618  EEETTYPSPE-----LKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMAAWKR 672
             E  +YP  E     LK VLE T GI L+QEQVMQIA V A Y  G AD LRR+M   K+
Sbjct: 658  REAISYPDIEWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGK-KK 716

Query: 673  HGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKC 732
               +   +   + G    G     + +IF+ ++ F  YGF +SH+A++AL++Y + WLK 
Sbjct: 717  PEEMAKQRSVFKEGAETMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776

Query: 733  HEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGAQPAIR 792
            H PA F  A++ +          ++ +  R  L+I P D+ +  +   +   DG    I 
Sbjct: 777  HYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVND-DG---EIV 832

Query: 793  MGLRMISGFREEDARRIEAARHRRA-FSDIADL---DDRAGLDARAQALLADAGALRALA 848
             G+  I G  E     I  AR+    F D+ DL    D   L+ R    L  +GA   L 
Sbjct: 833  YGIGAIKGVGEGPIEAIIEARNNDGYFRDLFDLCARTDIKKLNRRVLEKLIMSGAFDRLG 892

Query: 849  GNR---------------HKARWEVAGVHKQLGLFAGLPSP-DEAVVELPSPTVGEDLHA 892
             +R                 A+ E  G     G+ A  P   +++   +P       L  
Sbjct: 893  PHRAALMNSLADAMKSAEQHAKAEAIGQADMFGVLAETPEQVEQSYSTVPPWPEQVVLDG 952

Query: 893  DYATVGTTLGPHPLALLRAEL-RKRRCRSSQELMAVEHGRNVSVAGLVTGRQRPGTASG- 950
            +  T+G  L  HP+     E+ R       +++   E G+  +  GLV   +   T  G 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLAARVMVTKRGN 1012

Query: 951  -VTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLMKVDGR 990
             +   TL+D  G L V+++ D  ++ +  L   R++   G+
Sbjct: 1013 RIGVCTLDDRSGRLEVMLFTDALDKYQHLLEQDRILIASGQ 1053