Pairwise Alignments

Query, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

Subject, 1167 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score =  378 bits (970), Expect = e-108
 Identities = 315/1078 (29%), Positives = 509/1078 (47%), Gaps = 103/1078 (9%)

Query: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPLI 62
            +  L   S +S   GA    ++  +A   G  A+AITD   L   +   + A+   L  I
Sbjct: 20   FVHLRVHSAYSLLEGALPLKKIMSKAVGDGQPAIAITDTNNLFVALEFSEKARDEGLQPI 79

Query: 63   IGSEVRIDNG----------------PKLVLLVEDLSGYQHLCRLITLARRRAEKGSY-- 104
            IG ++ ID                  P +VLL  +  GY+ L  L++ A    E GS+  
Sbjct: 80   IGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYERLVDLVSRAYLDGEGGSHSV 139

Query: 105  RLLREDFDQPL-PGLLALWVA----------EDSDTQADSQWL--RRTFGERLWLAVHLH 151
             + R   ++    GL+AL  A          E    QA  + L  +  FG+RL++ +   
Sbjct: 140  HITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKERLLTLKSLFGDRLYIELQRQ 199

Query: 152  CGQNDARHLEQRLQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLH 211
             G  D  H  + + LA    +P VA  +    ++      D + A+ H+  V++  +R  
Sbjct: 200  SGY-DRSHERRLIGLAYEHDIPLVATNEAFFPSKADYEAHDALMAVAHNAIVSD-DSRFR 257

Query: 212  PNGERHLRSLDALAALYPQ--PLLDETETIARRCTFDLSQLRYHYPHELVPAGHNAQSWL 269
               + +L+S D + AL+      L+ T  IA RC++ L +     P     A  + ++  
Sbjct: 258  LTPDHYLKSRDEMTALFADLPEALENTVEIALRCSYVLKKRGPILPR-FTGASDDPEAAE 316

Query: 270  RAVTEEGIAKRWPQGVDAKTA--------------QQINSELELISELGYESYFLTVHDI 315
            RA TEE + ++  +G+D + +              ++++ EL +IS + +  YFL V D 
Sbjct: 317  RAETEE-LRRQAVEGLDQRLSALGMAPGYTEQDYRERLDFELGVISRMKFPGYFLIVADF 375

Query: 316  VQFARSRSI-LCQGRGSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDFE 374
            +++A+ + I +  GRGS A S V YAL IT++DP   S+LFERFL+ ER   PD D+DF 
Sbjct: 376  IKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFC 435

Query: 375  HERREEVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKALGLPPDQINALADCCGRWS 434
             +RREEV++YV ++YGR + A      S  A  A+RDV + L +P  Q++ +        
Sbjct: 436  QDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNP 495

Query: 435  DAAPPLD-------RLREGGFDPDSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLD 487
                PL        RL+E       P++ R+L + Q++ G  RH S H  G VI + PL 
Sbjct: 496  ANPTPLSKAIEEEPRLQEEA--DKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLS 553

Query: 488  TLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRDLALA 547
             LVP+     ++  + Q++   +++ GL+K D L L  L+ ++   D + + R   + LA
Sbjct: 554  KLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAK-RGIKVDLA 612

Query: 548  TIPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPIQGGM 607
             IP ED  TY M+S+ +TIGVFQ+ES      L  ++P    D++  VA+ RPGP++   
Sbjct: 613  AIPLEDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMEN-- 670

Query: 608  VHPYLRRRNKEEETTYPSPELKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSM 667
            +  Y  R++ EEE     P +  +L+ T G+ ++QEQVMQIA V + Y  GEAD LRR+M
Sbjct: 671  IPVYNARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAM 730

Query: 668  AAWKRHGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFALLTYAS 727
               K    ++  +ER   G +KNG S+  A  IF+ +  F +YGF +SHAA++A+++Y +
Sbjct: 731  GK-KIKEEMDQQRERFVDGAIKNGVSKPQANTIFDLLAKFANYGFNKSHAAAYAIVSYQT 789

Query: 728  CWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGA 787
             ++K H P  F  A +          +   QDA R  +++    VQ      S    +  
Sbjct: 790  AYMKAHYPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEVVAPSVQT-----SFRQFETG 844

Query: 788  QPAIRMGLRMISGFREEDARRIEAARHRRAFSDIADL---DDRAGLDARAQALLADAGAL 844
            +  I   L  I G  E     I   R  + F+ + D     D   ++ R    L +AGA 
Sbjct: 845  ENRIYYSLAAIKGVGEGAVEHIVQVRGEKPFTSLEDFCLRIDPKQINRRVLESLINAGAF 904

Query: 845  RALAGNRHKARWEVAGVHKQLGL-----------------FAGLPSPDEAVV-ELPSPTV 886
                 +R +    + G+ + +G                    G   P++ ++    S   
Sbjct: 905  DCFGRDRAEL---IGGLDRIIGYAQMAQNNRTIGQSDMFGSGGGTGPEKLILPAFQSWLP 961

Query: 887  GEDLHADYATVGTTLGPHPLALLRAELRKRRCRSSQEL-MAVEHGRNV--SVAGLVTGRQ 943
             E L  +Y  +G  L  HPL   R  L K R ++  +   AV+ G +    +AG VTG+Q
Sbjct: 962  SEKLIREYQVLGFYLTAHPLDTYRPLLEKLRVQNFADFSAAVKQGASTVGRLAGTVTGKQ 1021

Query: 944  RPGTASG--VTFVTLEDEFGNLNVVVWRD-LAERQRQALVGSRL---MKVDGRWEAVG 995
               T +G  +  VT  D  G    V++ + LA+ +    VG  L   ++ + R E +G
Sbjct: 1022 ERKTRTGNKMGIVTFSDASGQYEAVLFSEGLAQFRDLLEVGKSLVINVQAEERPEGIG 1079