Pairwise Alignments

Query, 838 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417

Subject, 944 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417

 Score =  495 bits (1274), Expect = e-144
 Identities = 271/700 (38%), Positives = 405/700 (57%), Gaps = 33/700 (4%)

Query: 144 FSPNLPQGACPQCHGLGRVYEVTEALMVPDPSLTIRQRAVASWPL--AWQGQNQRDILVT 201
           FS N P GACP C GLG V +  +   + +  +T+ + A+  W     +  Q    +   
Sbjct: 268 FSFNNPAGACPTCDGLG-VKQFFDIKRLVNGDMTLAEGAIRGWDRRNVYYFQMLGSLASH 326

Query: 202 LGYDVDIPWRDLPKKQRDWILFTEETPTVPVYAGFTPEQTRDALKRKLEPSYQGTFMGAR 261
             + +++P+  LP  Q+  IL    +  V     F     R  + ++  P     F G  
Sbjct: 327 YKFSLEVPFNQLPADQQKVILHGSGSQNVD----FKYLNDRGDIVKRSHP-----FEGIV 377

Query: 262 RYILHTFAHTQSALMKKRVSQFMQGSACPLCEGKRLTKAALSVKFAGVDIGELSQLSLAQ 321
             +   +  T+SA +++ +++F+    CP C G RL + A  V      +  ++ L +  
Sbjct: 378 PNLERRYRETESASVREELAKFLSTQPCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGD 437

Query: 322 LAELLRPVAAGQDTMKLSVEKRLAAQRIAQDLLERVSTLTELGLGYLSLERSTPTLSSGE 381
             E           +KL+  +   A +I +++ ER+  L  +GL YLSL+RS  TLS GE
Sbjct: 438 ACEYF-------GVLKLTGRRGEIADKILKEIRERLQFLVNVGLDYLSLDRSADTLSGGE 490

Query: 382 LQRLRLATQLGSQLFGVIYVLDEPSAGLHPADGEALFTALDRLKAAGNSLFVVEHDLETM 441
            QR+RLA+Q+G+ L GV+Y+LDEPS GLH  D + L   L  L+  GN++ VVEHD + +
Sbjct: 491 AQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAI 550

Query: 442 RRADWLIDVGPAAGEHGGQVLYSGPPAGLAQVQASQTRAYLFAEKRVSKQERRDPTGW-- 499
           R AD+++D+GP AG HGG ++  G PA +     S T  YL    ++    +R P     
Sbjct: 551 RLADYVVDIGPGAGVHGGHIVAEGTPAEVMAHPDSLTGKYLSGRVKIEVPAKRTPRNKKL 610

Query: 500 -LTLQGVTRNNLKDLNVDFPLGCFTAVTGISGSGKSSLVSQALLELVSAGLGRVVENDEE 558
            L L+G   NNL++++++ P+G  T VTG+SGSGKS+L++  L  L +  L         
Sbjct: 611 ALHLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLSATALNGAT----- 665

Query: 559 PSLEDDAPQTSGGHIHAGLEHIRRLVQVDQKPIGRTPRSNLATYTGLFDNVRKLFAATPA 618
            +LE  A  +       GLEH+ ++V +DQ PIGRTPRSN ATYTGLF  +R+LFA  P 
Sbjct: 666 -TLEAAAHDSI-----KGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPE 719

Query: 619 AKKRHYDAGQFSFNVAKGRCPNCEGEGFVSVELLFMPSVYAPCPTCHGARYNPETLAVKW 678
           ++ R Y  G+FSFNV  GRC  C+G+G + VE+ F+P +Y PC  C   RYN ETL +K+
Sbjct: 720 SRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKY 779

Query: 679 QGLTIAQVLGLTVEQAVEVFAEQPSVLRSLQVLRDIGLGYLRLGQPATELSGGEAQRIKL 738
           +G +I + L +T+E+A   F   P++ R LQ L D+GL Y++LGQ AT LSGGEAQR+KL
Sbjct: 780 KGKSIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKL 839

Query: 739 ATELQRNARGATLYVLDEPTTGLHPRDVDRLLSQLNHLVEAGHTVVVVEHEMRVVAQSDW 798
           + EL +   G TLY+LDEPTTGLH  D+ +LL  L+ L + G+TVVV+EH + V+  +DW
Sbjct: 840 SRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADW 899

Query: 799 VIDIGPGAGDLGGAVVASGTPQKVAKSKKSRTAAFLAKAL 838
           ++D+GP  G  GG ++A GTP++V++  +S T  +L   L
Sbjct: 900 LVDLGPEGGSKGGQIIAVGTPEQVSEMPQSHTGYYLKPLL 939



 Score =  134 bits (338), Expect = 2e-35
 Identities = 60/113 (53%), Positives = 89/113 (78%)

Query: 18  VRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRYFESVAPYARR 77
           + +RGAR HNL+N+D+ +PRD L+V TG+SGSGKSSLAF T+YAE QRRY ES++ YAR+
Sbjct: 4   ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 78  LIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLIRMLYSRAG 130
            +  +  PDVD+IEGL PA++++Q+  + + RS+VG++T +   +R+LY+R G
Sbjct: 64  FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVG 116



 Score = 65.9 bits (159), Expect = 1e-14
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 18/150 (12%)

Query: 18  VRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRYFESVAPYARR 77
           + ++GAR +NLRNVD++IP   L   TGVSGSGKS+L  +T++         + A     
Sbjct: 612 LHLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFP------LSATALNGAT 665

Query: 78  LIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLIRMLY-----SRAGSY 132
            ++      +  +E L   V + Q     + RS+  + T L + IR L+     SR+  Y
Sbjct: 666 TLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPESRSRGY 725

Query: 133 PPGQPMLYAEDFSPNLPQGACPQCHGLGRV 162
            PG+       FS N+  G C  C G G +
Sbjct: 726 GPGR-------FSFNVKGGRCEACQGDGLI 748



 Score = 52.8 bits (125), Expect = 9e-11
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 21/123 (17%)

Query: 500 LTLQGVTRNNLKDLNVDFPLGCFTAVTGISGSGKSSLVSQAL--------LELVSAGLGR 551
           + ++G   +NLK++++  P      +TG+SGSGKSSL    L        +E +SA   +
Sbjct: 4   ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 552 VVENDEEPSLEDDAPQTSGGHIHAGLEHIRRLVQVDQKPIGRTPRSNLATYTGLFDNVRK 611
            +   E+P ++              +E +   + ++QK     PRS + T T ++D +R 
Sbjct: 64  FLSMMEKPDVDT-------------IEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRL 110

Query: 612 LFA 614
           L+A
Sbjct: 111 LYA 113