Pairwise Alignments
Query, 838 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417
Subject, 1947 a.a., Excinuclease ABC subunit A, dimeric form from Variovorax sp. SCN45
Score = 478 bits (1231), Expect = e-138
Identities = 264/568 (46%), Positives = 353/568 (62%), Gaps = 41/568 (7%)
Query: 288 ACPLCEGKRLTKAALSVKFA--------GVDIGELSQLSLAQLAELLRPVAAGQDTMKLS 339
ACP CEG RL A +V F G+ I EL+++S+ ++ + +A L+
Sbjct: 1375 ACPTCEGTRLNATARAVSFGASLANGSGGIGITELARMSVTEVRQWFEGLA-------LT 1427
Query: 340 VEKRLAAQRIAQDLLERVSTLTELGLGYLSLERSTPTLSSGELQRLRLATQLGSQLFGVI 399
+ A+ + ++ R+ L E+GLGYL+L+R PTLS GE QR+RLA QLGS L GV
Sbjct: 1428 GREAEIARDLVPEIKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQGVC 1487
Query: 400 YVLDEPSAGLHPADGEALFTALDRLKAAGNSLFVVEHDLETMRRADWLIDVGPAAGEHGG 459
YVLDEP+ GLH D + L AL +L GN+L VVEHD +T+RRAD +ID+GP+AG+ GG
Sbjct: 1488 YVLDEPTIGLHARDNQILLNALHKLGEKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGG 1547
Query: 460 QVLYSGPPAGLAQVQASQTRAYLFAEKRVSKQERR-----DPTG-----WLTLQGVTRNN 509
+++ G A + SQT YL R Q RR DP WLT+ G +N
Sbjct: 1548 RLVAEGTVADIQNAGDSQTGRYLRDAIRHPLQARRSIPSPDPQAEDNGEWLTVHGADLHN 1607
Query: 510 LKDLNVDFPLGCFTAVTGISGSGKSSLVSQALLELVSAGLGRVVENDEEPSLEDDA---- 565
L+DL PL VTG+SGSGKS+L LL V G VV+ + + DA
Sbjct: 1608 LQDLTATLPLHRLVVVTGVSGSGKSTLARDVLLASVQ---GIVVQRMTKAGRDADAAGKR 1664
Query: 566 PQTSGGHIHAGLEHIRRLVQVDQKPIGRTPRSNLATYTGLFDNVRKLFAATPAAKKRHYD 625
P +G G E I R+++VDQ PIG+TPRS ATY G +D +RKLFA T AK R Y
Sbjct: 1665 PAWAGCRKVDGYETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFADTLEAKARGYG 1724
Query: 626 AGQFSFNVAKGRCPNCEGEGFVSVELLFMPSVYAPCPTCHGARYNPETLAVKWQGLTIAQ 685
+FSFN +GRCP CEG G ++E+ F+P V PC CHGAR+NPETLAV W+G +I
Sbjct: 1725 PARFSFNTGEGRCPGCEGAGVRTIEMSFLPDVKVPCEVCHGARFNPETLAVSWRGKSIGD 1784
Query: 686 VLGLTVEQAVEVFAEQPSVLRSLQVLRDIGLGYLRLGQPATELSGGEAQRIKLATELQR- 744
VL + V++AVE FA P++ LQ+L+D+GLGYL LGQP+ LSGGEAQRIKL TEL +
Sbjct: 1785 VLKMEVDEAVEFFASMPNIAHPLQLLKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKV 1844
Query: 745 ----NARGA----TLYVLDEPTTGLHPRDVDRLLSQLNHLVEAGHTVVVVEHEMRVVAQS 796
RG TLYVLDEPT GLH DV++L+ L+ LV GH+VVV+EH++ ++A++
Sbjct: 1845 RDDITRRGQKAPHTLYVLDEPTVGLHMADVEKLIHVLHRLVNGGHSVVVIEHDLDLIAEA 1904
Query: 797 DWVIDIGPGAGDLGGAVVASGTPQKVAK 824
DW+ID+GP G+ GG +VA+ P++V +
Sbjct: 1905 DWIIDLGPEGGNAGGRIVAAAPPEEVVR 1932
Score = 433 bits (1113), Expect = e-125
Identities = 278/794 (35%), Positives = 402/794 (50%), Gaps = 123/794 (15%)
Query: 130 GSYPPGQPMLYAED----FSPNLPQGACPQCHGLGRVYEVTEALMVPDPSLTIRQRAVAS 185
G + P + YA+ FS N GAC C G GRV V L++P+ LT+R A+ +
Sbjct: 251 GLHCPESDIRYADPIPSMFSFNSAVGACDTCRGFGRVIGVDLGLVIPNDKLTLRAGAIKT 310
Query: 186 WPLAWQGQNQRDIL---VTLGYDVDIPWRDLPKKQRDWILFTEETPTVPVYAGFTPEQTR 242
+ Q D++ T G D PW L +Q+ W++ E TP
Sbjct: 311 IQTPAWKEAQDDLMRHAETAGIPRDTPWNKLTDEQKHWVI--EGTPNYK----------- 357
Query: 243 DALKRKLEPSYQGTFMGARRYILHTFAHTQSALMKKRVSQFMQGSACPLCE--------- 293
E ++ + G RR+ + + ++ +S++ + CP C
Sbjct: 358 -------EGNWNKQWYGVRRFFAYLESKAYKMHIRVLLSKYRSYTQCPTCSGARLKLDSL 410
Query: 294 -----------------------GKRLTKAALSVKFAGVDIGELSQLSLAQLAEL----- 325
G + T+A L G+ + +L L + +L +
Sbjct: 411 IWRIGSKEDADAVLPPEKRFMPTGAKWTRAQLEA-LPGLCLHDLMLLPIERLRKFFDRMG 469
Query: 326 --LRPVAAGQDTMKLSVE-----------------------KRLAAQRIAQDLLERVSTL 360
+ P AG L+ + A + + +++ R+ L
Sbjct: 470 QGMAPSLAGGGQAALASPAASNEAESPHPNLPPAGEGARQGEAQALKLLFEEITTRLRYL 529
Query: 361 TELGLGYLSLERSTPTLSSGELQRLRLATQLGSQLFGVIYVLDEPSAGLHPADGEALFTA 420
++G+GYL+L+R + TLS GE+QR+ L T LG+ L ++VLDEPS GLHP D + A
Sbjct: 530 HDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDMNRITEA 589
Query: 421 LDRLKAAGNSLFVVEHDLETMRRADWLIDVGPAAGEHGGQVLYSGPPAGLAQVQASQTRA 480
+ RL+ AGN+L VVEHD M AD +ID+GP G GGQ+++ G L + T
Sbjct: 590 MLRLRDAGNTLVVVEHDPAVMLAADRVIDMGPGPGARGGQIVFDGTTDQLRDAD-TLTGQ 648
Query: 481 YLFAEKRVSKQERR---DPTGWLTLQGVTRNNLKDLNVDFPLGCFTAVTGISGSGKSSLV 537
YL K++ +R + T L L+GV +NLK++ VDFPL VTG+SGSGKS+L+
Sbjct: 649 YLGGRKKIGMGFKRLVSENTHRLILEGVREHNLKNITVDFPLARLVCVTGVSGSGKSTLI 708
Query: 538 SQALLELVSAGLGRVVENDEEPSLEDDAPQTSGGHIH-AGLEHIRRLVQVDQKPIGRTPR 596
L + G+ A +T G H G +H+ +V VDQ PIG+T R
Sbjct: 709 QDVLAPALMRHFGK-------------ATETPGAHDRMLGADHLGDVVFVDQSPIGKTAR 755
Query: 597 SNLATYTGLFDNVRKLFAATPAAKKRHYDAGQFSFNVAKGRCPNCEGEGFVSVELLFMPS 656
SN A+Y G +D +R++FA +++R Y A +FSFN GRCP C G GF VE+ F+
Sbjct: 756 SNPASYVGAWDAIREIFATAALSRQRGYTASKFSFNSGDGRCPTCGGSGFEHVEMQFLSD 815
Query: 657 VYAPCPTCHGARYNPETLAV----KWQGLTIAQVLGLTVEQAVEVFAEQPSVLRSLQVLR 712
VY CP C G RY PE L V K + +A VL LTV +A VF VLR LQ +
Sbjct: 816 VYLRCPDCDGKRYRPEILEVRVERKGKSYNVADVLDLTVAEAAAVFEADRDVLRVLQPIS 875
Query: 713 DIGLGYLRLGQPATELSGGEAQRIKLATELQRNARGA-----------TLYVLDEPTTGL 761
D+GL Y++LGQP LSGGEAQR+KLA L A+GA TL++ DEPTTGL
Sbjct: 876 DVGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARKGTLFLFDEPTTGL 935
Query: 762 HPRDVDRLLSQLNHLVEAGHTVVVVEHEMRVVAQSDWVIDIGPGAGDLGGAVVASGTPQK 821
H D+ RL+ L L+EAGH+++V+EH + V+ SDW+ID+GP G+ GG VVA GTP++
Sbjct: 936 HFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGEGGGQVVAEGTPEQ 995
Query: 822 VAKSKKSRTAAFLA 835
+ +++ S T A LA
Sbjct: 996 LRENRASLTGAALA 1009
Score = 140 bits (354), Expect = 5e-37
Identities = 94/282 (33%), Positives = 138/282 (48%), Gaps = 46/282 (16%)
Query: 289 CPLCEGKRLTKAALSVKFAGVDIGELSQLSLAQLAELLRPVAAGQDTMKLSVEKRLAAQR 348
CP C+GKR L V+ E D + L+V + A
Sbjct: 820 CPDCDGKRYRPEILEVR-----------------VERKGKSYNVADVLDLTVAEAAAVFE 862
Query: 349 IAQDLLERVSTLTELGLGYLSLERSTPTLSSGELQRLRLATQLGSQL------------F 396
+D+L + ++++GL Y+ L + PTLS GE QRL+LA L
Sbjct: 863 ADRDVLRVLQPISDVGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATASKQSVARK 922
Query: 397 GVIYVLDEPSAGLHPADGEALFTALDRLKAAGNSLFVVEHDLETMRRADWLIDVGPAAGE 456
G +++ DEP+ GLH D L AL +L AG+SL V+EH+L+ +R +DWLID+GP GE
Sbjct: 923 GTLFLFDEPTTGLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLIDLGPEGGE 982
Query: 457 HGGQVLYSGPPAGLAQVQASQTRAYL-----------------FAEKRVSKQERRDPTGW 499
GGQV+ G P L + +AS T A L A + ++ ++ +
Sbjct: 983 GGGQVVAEGTPEQLRENRASLTGAALADYELAIGPDAYKVAERAARRYIANAKKAPGSDA 1042
Query: 500 LTLQGVTRNNLKDLNVDFPLGCFTAVTGISGSGKSSLVSQAL 541
+ + +NLK+L+VD P G F+ VTG+SGSGKS+L L
Sbjct: 1043 VQIVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDIL 1084
Score = 136 bits (342), Expect = 1e-35
Identities = 94/262 (35%), Positives = 129/262 (49%), Gaps = 51/262 (19%)
Query: 625 DAGQFSFNVAKGRCPNCEGEG--------------------------FVSVELLFMPSVY 658
D FS+N G CP+C G G F E+ + V
Sbjct: 1316 DPRLFSYNSKHGWCPDCVGTGVKLSKDQRKVFDDSVRDDDNKGREQTFAEPEVEDLADV- 1374
Query: 659 APCPTCHGARYNPETLAVKW--------QGLTIAQVLGLTVEQAVEVF---------AE- 700
CPTC G R N AV + G+ I ++ ++V + + F AE
Sbjct: 1375 -ACPTCEGTRLNATARAVSFGASLANGSGGIGITELARMSVTEVRQWFEGLALTGREAEI 1433
Query: 701 ----QPSVLRSLQVLRDIGLGYLRLGQPATELSGGEAQRIKLATELQRNARGATLYVLDE 756
P + L+ L ++GLGYL L + A LSGGEAQRI+LA +L N +G YVLDE
Sbjct: 1434 ARDLVPEIKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQG-VCYVLDE 1492
Query: 757 PTTGLHPRDVDRLLSQLNHLVEAGHTVVVVEHEMRVVAQSDWVIDIGPGAGDLGGAVVAS 816
PT GLH RD LL+ L+ L E G+T+VVVEH+ + ++D +IDIGP AG GG +VA
Sbjct: 1493 PTIGLHARDNQILLNALHKLGEKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLVAE 1552
Query: 817 GTPQKVAKSKKSRTAAFLAKAL 838
GT + + S+T +L A+
Sbjct: 1553 GTVADIQNAGDSQTGRYLRDAI 1574
Score = 127 bits (318), Expect = 8e-33
Identities = 61/132 (46%), Positives = 91/132 (68%)
Query: 16 GFVRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRYFESVAPYA 75
G +R+RGAR+HNL+N+D+DI + V TG SGSGKSSL F T+YAE QRRY E+ + YA
Sbjct: 4 GSIRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYA 63
Query: 76 RRLIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLIRMLYSRAGSYPPG 135
R+ +D++ P VD +EG+PPA+A+ Q S+RS+VG++T L+ +++L++RA
Sbjct: 64 RQFLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAADLFDR 123
Query: 136 QPMLYAEDFSPN 147
+ L SP+
Sbjct: 124 ETALPVRHDSPD 135
Score = 114 bits (286), Expect = 4e-29
Identities = 54/113 (47%), Positives = 78/113 (69%)
Query: 18 VRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRYFESVAPYARR 77
V++ AREHNL+N+ VDIPR V TGVSGSGKS+LAF ++ E QRRY ES+ YAR
Sbjct: 1043 VQIVNAREHNLKNLSVDIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARS 1102
Query: 78 LIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLIRMLYSRAG 130
++ G P+VD++ G+PP VA++Q+ +S+VG+ T + +R+LY + G
Sbjct: 1103 IVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLG 1155
Score = 61.6 bits (148), Expect = 4e-13
Identities = 52/155 (33%), Positives = 70/155 (45%), Gaps = 17/155 (10%)
Query: 10 ITAQQTGFVRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRYF- 68
+ ++ T + + G REHNL+N+ VD P LV TGVSGSGKS+L V A A R+F
Sbjct: 663 LVSENTHRLILEGVREHNLKNITVDFPLARLVCVTGVSGSGKSTL-IQDVLAPALMRHFG 721
Query: 69 ---ESVAPYARRLIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLIRML 125
E+ + R L + L V + Q +ARS+ S IR +
Sbjct: 722 KATETPGAHDRML----------GADHLGDVVFVDQSPIGKTARSNPASYVGAWDAIREI 771
Query: 126 YSRAGSYPPGQPMLYAEDFSPNLPQGACPQCHGLG 160
++ A Q A FS N G CP C G G
Sbjct: 772 FATAAL--SRQRGYTASKFSFNSGDGRCPTCGGSG 804
Score = 59.3 bits (142), Expect = 2e-12
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 26/210 (12%)
Query: 7 TPAITAQQTG-FVRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQR 65
+P A+ G ++ V GA HNL+++ +P LVV TGVSGSGKS+LA + A Q
Sbjct: 1586 SPDPQAEDNGEWLTVHGADLHNLQDLTATLPLHRLVVVTGVSGSGKSTLARDVLLASVQG 1645
Query: 66 RYFESV------APYARRLIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLS 119
+ + A A + G VD E + + + Q + RS +
Sbjct: 1646 IVVQRMTKAGRDADAAGKRPAWAGCRKVDGYETIDRVLEVDQTPIGKTPRSCPATYIGFW 1705
Query: 120 SLIRMLY-----SRAGSYPPGQPMLYAEDFSPNLPQGACPQCHGLGRVYEVTEALMVPDP 174
IR L+ ++A Y P + FS N +G CP C G G E +PD
Sbjct: 1706 DTIRKLFADTLEAKARGYGPAR-------FSFNTGEGRCPGCEGAG--VRTIEMSFLPDV 1756
Query: 175 SLTIRQRAVASW-----PLAWQGQNQRDIL 199
+ A + ++W+G++ D+L
Sbjct: 1757 KVPCEVCHGARFNPETLAVSWRGKSIGDVL 1786
Score = 53.5 bits (127), Expect = 1e-10
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 21/125 (16%)
Query: 498 GWLTLQGVTRNNLKDLNVDFPLGCFTAVTGISGSGKSSLVSQAL--------LELVSAGL 549
G + ++G ++NL++L++D G T VTG SGSGKSSLV L +E SA
Sbjct: 4 GSIRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYA 63
Query: 550 GRVVENDEEPSLEDDAPQTSGGHIHAGLEHIRRLVQVDQKPIGRTPRSNLATYTGLFDNV 609
+ ++ ++P+++ +E + + +DQ R+ RS + T T L D++
Sbjct: 64 RQFLDRMDKPAVDK-------------VEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHL 110
Query: 610 RKLFA 614
+ LFA
Sbjct: 111 KLLFA 115