Pairwise Alignments

Query, 838 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417

Subject, 940 a.a., excinuclease ABC, A subunit from Enterobacter asburiae PDN3

 Score =  519 bits (1336), Expect = e-151
 Identities = 281/700 (40%), Positives = 404/700 (57%), Gaps = 32/700 (4%)

Query: 144 FSPNLPQGACPQCHGLGRVYEVTEALMVPDPSLTIRQRAVASWPLA--WQGQNQRDILVT 201
           FS N P GACP C GLG         ++ +P L++   A+  W     +  Q  + +   
Sbjct: 268 FSFNNPAGACPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDKRNFYYFQMLKSLAEH 327

Query: 202 LGYDVDIPWRDLPKKQRDWILFTEETPTVPVYAGFTPEQTRDALKRKLEPSYQGTFMGAR 261
             +DV+ PW  L       ILF      +     F     R     +  P     F G  
Sbjct: 328 YKFDVEAPWASLSPNVHKVILFGSGKENIE----FKYMNDRGDTSVRRHP-----FEGVL 378

Query: 262 RYILHTFAHTQSALMKKRVSQFMQGSACPLCEGKRLTKAALSVKFAGVDIGELSQLSLAQ 321
             +   +  T+S+ +++ +++F+   +C  CEG RL + A  V      +  +S +S+  
Sbjct: 379 HNMERRYKETESSAVREELAKFISNRSCATCEGTRLRREARHVFVENTALPTISDMSIGH 438

Query: 322 LAELLRPVAAGQDTMKLSVEKRLAAQRIAQDLLERVSTLTELGLGYLSLERSTPTLSSGE 381
                       + +KLS ++   A+++ +++ +R+  L  +GL YL+L RS  TLS GE
Sbjct: 439 AMNFF-------NNLKLSGQRAKIAEKVLKEIGDRLKFLVNVGLNYLTLSRSAETLSGGE 491

Query: 382 LQRLRLATQLGSQLFGVIYVLDEPSAGLHPADGEALFTALDRLKAAGNSLFVVEHDLETM 441
            QR+RLA+Q+G+ L GV+YVLDEPS GLH  D E L   L  L+  GN++ VVEHD + +
Sbjct: 492 AQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLVHLRNLGNTVIVVEHDEDAI 551

Query: 442 RRADWLIDVGPAAGEHGGQVLYSGPPAGLAQVQASQTRAYLFAEKRVSKQERR---DPTG 498
           R AD +ID+GP AG HGGQV+  G    +  V  S T  ++  ++++   ++R   DP  
Sbjct: 552 RAADHVIDIGPGAGVHGGQVVAEGTLKDIMAVPESLTGQFMSGKRKIEVPKQRVAADPEK 611

Query: 499 WLTLQGVTRNNLKDLNVDFPLGCFTAVTGISGSGKSSLVSQALLELVSAGLGRVVENDEE 558
            L L G   NNLKD+ +  P+G FT +TG+SGSGKS+L++  L  +    L         
Sbjct: 612 VLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQTALNGA------ 665

Query: 559 PSLEDDAPQTSGGHIHAGLEHIRRLVQVDQKPIGRTPRSNLATYTGLFDNVRKLFAATPA 618
            +L + AP         GLEH  +++ +DQ PIGRTPRSN ATYTG+F  VR+LFA  P 
Sbjct: 666 -TLAEPAPYRD----IQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPE 720

Query: 619 AKKRHYDAGQFSFNVAKGRCPNCEGEGFVSVELLFMPSVYAPCPTCHGARYNPETLAVKW 678
           A+ R Y  G+FSFNV  GRC  C+G+G + VE+ F+P +Y PC  C G RYN ETL +K+
Sbjct: 721 ARSRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY 780

Query: 679 QGLTIAQVLGLTVEQAVEVFAEQPSVLRSLQVLRDIGLGYLRLGQPATELSGGEAQRIKL 738
           +G TI +VL +T+E+A E F   P++ R LQ L D+GL Y+RLGQ AT LSGGEAQR+KL
Sbjct: 781 KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL 840

Query: 739 ATELQRNARGATLYVLDEPTTGLHPRDVDRLLSQLNHLVEAGHTVVVVEHEMRVVAQSDW 798
           A EL +   G TLY+LDEPTTGLH  D+ +LL  L+ L + G+T+VV+EH + V+  +DW
Sbjct: 841 ARELSKRGTGQTLYILDEPTTGLHFADIQQLLEVLHQLRDQGNTIVVIEHNLDVIKTADW 900

Query: 799 VIDIGPGAGDLGGAVVASGTPQKVAKSKKSRTAAFLAKAL 838
           ++D+GP  G  GG ++ SGTP+ VA+ + S TA FL   L
Sbjct: 901 IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPLL 940



 Score =  132 bits (332), Expect = 9e-35
 Identities = 61/113 (53%), Positives = 88/113 (77%)

Query: 18  VRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRYFESVAPYARR 77
           + VRGAR HNL+N+++ IPRD L+V TG+SGSGKSSLAF T+YAE QRRY ES++ YAR+
Sbjct: 4   IEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 78  LIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLIRMLYSRAG 130
            +  +  PDVD IEGL PA++++Q+  + + RS+VG++T +   +R+LY+R G
Sbjct: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVG 116



 Score = 57.0 bits (136), Expect = 5e-12
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 18/156 (11%)

Query: 10  ITAQQTGFVRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRYFE 69
           + A     +++ GAR +NL++V + +P       TGVSGSGKS+L   T++  AQ     
Sbjct: 605 VAADPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQ----- 659

Query: 70  SVAPYARRLIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLIRMLY--- 126
             A     L +     D+  +E     + + Q     + RS+  + T + + +R L+   
Sbjct: 660 -TALNGATLAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGV 718

Query: 127 --SRAGSYPPGQPMLYAEDFSPNLPQGACPQCHGLG 160
             +R+  Y PG+       FS N+  G C  C G G
Sbjct: 719 PEARSRGYTPGR-------FSFNVRGGRCEACQGDG 747



 Score = 53.9 bits (128), Expect = 4e-11
 Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 11/118 (9%)

Query: 500 LTLQGVTRNNLKDLNVDFPLGCFTAVTGISGSGKSSLVSQALLELVSAGLGRVVENDEEP 559
           + ++G   +NLK++N+  P      VTG+SGSGKSSL   A   L + G  R VE     
Sbjct: 4   IEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSL---AFDTLYAEGQRRYVE----- 55

Query: 560 SLEDDAPQTSGGHIHAGLEHIRRL---VQVDQKPIGRTPRSNLATYTGLFDNVRKLFA 614
           SL   A Q         ++HI  L   + ++QK     PRS + T T + D +R L+A
Sbjct: 56  SLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYA 113



 Score = 27.3 bits (59), Expect = 0.004
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 622 RHYDAGQFSFNVAKGRCPNCEGEG 645
           R  +   FSFN   G CP C+G G
Sbjct: 261 RELEPRLFSFNNPAGACPTCDGLG 284