Pairwise Alignments

Query, 469 a.a., porin from Pseudomonas simiae WCS417

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  181 bits (458), Expect = 5e-50
 Identities = 141/474 (29%), Positives = 219/474 (46%), Gaps = 63/474 (13%)

Query: 1   MKISTLALSITAAVLAQQAFADDFGLGSLGTGNGHSGFLEDSHAAISSRTMYYSADNRSG 60
           MK S +AL+++A   +Q A A           +   GF+EDS  ++ +R +Y+S D R+ 
Sbjct: 4   MKWSMIALAVSAGT-SQLAMAS--------AQDESKGFIEDSKLSVKTRMLYFSRDFRNN 54

Query: 61  TNNDLREAATALRF--DYKSGFTQGTIGLGFDVMAFGALRLDGGDGHTAGAGLSGNGNSF 118
                R   T L F   ++SGFTQGT+G+G D +    L+LD G G  AG GL       
Sbjct: 55  EGGQSRREETGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGR-AGTGL------- 106

Query: 119 FPTKNNGTEPADSFGRAAGNVKFRISQTELHVGGGLAPVLPILVSNDSRVAPQTFDGGIL 178
           FPT ++G    D + +  G VKFRIS T L VG      LP+  ++DSR+ P+   G ++
Sbjct: 107 FPTGSDG-RSQDDYSKGGGAVKFRISDTVLKVGDQFT-ALPVFATDDSRLLPEIAQGTLI 164

Query: 179 TSNDIPNVTFTGGELNRAEGRASSNSTGLSVAGGTRDSDSFKFGGVDYKPFGSSDNVIAK 238
           TSN+I  +T   G       +  +N          RDS   K   V    +  +D     
Sbjct: 165 TSNEIEGLTLHAGHFTSLTAQEQTN----------RDSFGLKEANVVGGTYAFTD----- 209

Query: 239 NLTLQYYYAQLQDFYKQNYFGLVHVLPLGNDQSFKTDLRYFDSSSDGKNGESGYQFNNNG 298
           NL+   YY++++D++++ Y  +   LP+ ++Q    D   +D+ S+   G + Y+     
Sbjct: 210 NLSTSLYYSKVEDYWRKYYANVNWALPISDNQGLVFDFNIYDTKSE---GSAEYR----- 261

Query: 299 GYAKHANEVDNKTYSAAFTYQLGGSSLMLGHIGVGDDGGFVWVNQGSLADPHAQGAGGSD 358
             A   +++DN+ +S +  Y +G  +  L +  V  DG +     G   D      GG  
Sbjct: 262 --AFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGDY-----GYGID------GGGT 308

Query: 359 FYLFTDAVVGQFSRAGEQVNFGQYSYDFKAY-VPGLKASVAYLDGRDIKSKVAGGPDQKE 417
            +L        F+   E+    +Y  +F  Y +PGL     Y+ G D  + VAG  + KE
Sbjct: 309 IFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSD--ANVAGTSNGKE 366

Query: 418 NEADFRLDYVVQAGPLKGFGTTFRTGTYHGKNTGTADQ---DQTRLIFNYTYAI 468
            E D  + YV+Q GP K      R  TY   +    D    D+ RLI  Y  +I
Sbjct: 367 WERDVDIKYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLSI 420