Pairwise Alignments

Query, 469 a.a., porin from Pseudomonas simiae WCS417

Subject, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  182 bits (463), Expect = 1e-50
 Identities = 151/489 (30%), Positives = 217/489 (44%), Gaps = 75/489 (15%)

Query: 2   KISTLALSITAAVLAQQAFADDFGLGSLGTGNGHSGFLEDSHAAISSRTMYYSADNRSGT 61
           +IS +AL++ AA  AQ     D             GF+EDSHA +  R  Y + D + GT
Sbjct: 5   RISLVALAMIAATQAQANDQAD-----------SKGFIEDSHANVLLRNAYINRDKKHGT 53

Query: 62  NNDLREAATALRFDYKSGFTQGTIGLGFDVMAFGALRLDGGDGHTAGAGLSGNGNSFFPT 121
           ++ + E   A   ++ SGFTQGT+G+G D     A+RLDGG GH  G G+    + F P 
Sbjct: 54  DDQI-EWGQAFIANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGV----DFFKPH 108

Query: 122 KNNGTE----PADSFGRAAGNVKFRISQTELHVGGGLAPVLPILVSNDSRVAPQTFDGGI 177
           +    E       +  R    VKFRIS T L  G  + P LP+L  +D+R+ P++F G +
Sbjct: 109 ETTNAEGNASSPHNLARGGAAVKFRISNTVLKYGDQM-PALPVLQYDDARLLPESFTGTL 167

Query: 178 LTSNDIPNVTFTGGELNR-----AEGRASSNSTGLSVAGGTRDSDSFKFGGVDYKPFGSS 232
           +TS +I  +    G   +     AE R       ++V GG     S+KF           
Sbjct: 168 ITSKEIQGLELNAGRFTQEARKSAERRDGGGLKSINVLGG-----SYKF----------- 211

Query: 233 DNVIAKNLTLQYYYAQLQDFYKQNYFGLVHVLPLGNDQSFKTDLRYFDSSSDGKNGESGY 292
                 N T   Y A  +D  K++Y GL +V P+ +DQS   D              +GY
Sbjct: 212 ----TDNFTASLYTADNEDVMKKHYLGLNYVFPIASDQSLTLDF-------------NGY 254

Query: 293 QFNNNGGYAKHA--NEVDNKTYSAAFTYQLGGSSLMLGHIGVGDDGGFVWVNQGSLADPH 350
           + + N  Y K A  N   N  +S A TY  G  S  L H       G+   N G   +  
Sbjct: 255 KSDINNKYVKAAGLNGDSNTIWSLAATYAYGAHSFTLAHQRSTGSTGY---NYGFYQNAG 311

Query: 351 AQGAGGSDFYLFTDAVVGQFSRAGEQVNFGQYSYDFKAY-VPGLKASVAYLDGRDIKSKV 409
             G GGS  YL  ++    F+   E+     Y  DF AY +PGL   +AY+ G +I ++ 
Sbjct: 312 GVGDGGSTIYL-ANSYWSDFNAEDERSWQLGYGLDFGAYGIPGLTYKLAYVVGDNINTRN 370

Query: 410 AGGP----DQKENEADFRLDYVVQAGPLKGF-----GTTFRTGTYHGKNTGTADQDQTRL 460
              P    + KE E   ++ YVVQ GP K        +  RT     +N    D ++ R+
Sbjct: 371 VANPQGFGEGKEREIFNQIRYVVQDGPAKDLSIKLRSSFLRTNNAVQQNGYNDDGNEVRV 430

Query: 461 IFNYTYAIF 469
              Y  +IF
Sbjct: 431 FVEYPISIF 439