Pairwise Alignments

Query, 288 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 272 a.a., DNA-binding transcriptional regulator NimR from Escherichia coli ECRC62

 Score =  209 bits (533), Expect = 4e-59
 Identities = 109/263 (41%), Positives = 159/263 (60%), Gaps = 7/263 (2%)

Query: 1   MQRHRLDHRDPARVRDADLLPRAVVAVNATSTSESWEHAPHSHRKGQLMYTLRGVIHCQI 60
           M R  L+  +P R  +A       VA    + ++      H HRKGQL+  L G I C +
Sbjct: 1   MHRLNLNGYEPDRHHEA------AVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTV 54

Query: 61  EAGIWIVPPQCALWIPGGLPHAARGSGEAEVYCLLIDPDAAGALPAQCCTLSVSGLLHEL 120
           E  +W+VPPQ A+WIPGG+ H+ + +  AE+  L I+P A   +P  CCTL +S L  EL
Sbjct: 55  ENALWMVPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSAV-TMPTTCCTLKISPLCREL 113

Query: 121 ISKAVSFPQLYDEDGAQGRLIRTLLDELAQAPIEDLHLPMPRDPRLRRLADSLLADPGDK 180
           I    +       +    RLI+ L DEL Q P + LHLP+   P++R + + +   P + 
Sbjct: 114 ILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKIRTMVEMMAKGPVEW 173

Query: 181 ATLGQWAMRIGMSERSMTRLLLEEFGLSFGRWRRQLHVILSLQRLARGDSVQRVALDLGY 240
            +LGQWA    MSER++ RL+++E GLSF +WR+QL +I++LQ L +GD+VQ+VA  LGY
Sbjct: 174 GSLGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGY 233

Query: 241 ENASGFITMFRKAVGQPPARYLA 263
           ++ + FITMF+K +GQ P RY+A
Sbjct: 234 DSTTAFITMFKKGLGQTPGRYIA 256