Pairwise Alignments

Query, 264 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 271 a.a., Inner membrane ABC transporter permease protein YdcV from Azospirillum sp. SherDot2

 Score = 78.2 bits (191), Expect = 2e-19
 Identities = 67/260 (25%), Positives = 115/260 (44%), Gaps = 14/260 (5%)

Query: 8   VLQLLFTLLVCAFMLVPVLMSLLAGLTRNFFVGLS-SGLTFDWLIQVWQAYSPTVWL-SL 65
           VL   F   +  F++ P+L  +    +   F+     GL+  W  +V  A  P  WL +L
Sbjct: 11  VLHYAFCCAMMVFLVGPILAVIPISFSSAGFLSYPIPGLSLQWYDKVLAASGP--WLPAL 68

Query: 66  QLALACAVGVC----VIGVPAAYALVRMNNRFSRAFEELMVLPVAMPGLASALALLLTYG 121
           + +L    G      V+G  AA  L R +         L++ P+ +P + S +A+   + 
Sbjct: 69  RNSLIVGTGAMALATVLGTLAALGLARNDLPVRSFLLGLLIAPMVVPVVISGVAMYFLFA 128

Query: 122 QFGSFRSSWLFILVGHVLFTLPFLVRPVMAVMQRQQLPLLEEAAASLGAGPIKRFFSVVV 181
           + G   +S+  +++ H +   PF+V  V A ++     L+  AA SLGA P++ F +V +
Sbjct: 129 RIG-LTASYAGLILAHAVLGAPFVVITVTATLRNFDTTLVR-AAYSLGASPVRAFLTVTL 186

Query: 182 PNCRAGILAGVLMVVTLSLGEFNLTWMLHTPMTKTLPVGLADSYASARLEIASAYTLIFL 241
           P    G+L+G L     S  E  +   +  P  +TLP  + D       +      L   
Sbjct: 187 PLILPGVLSGGLFAFIFSFDEVVVALFIGGPEQRTLPRQMFDGIR----DTIDPSILAMS 242

Query: 242 LMIVPLLIALQAISARLSRG 261
            ++V + I    + ARL RG
Sbjct: 243 TLLVGVTIVFMGLLARLGRG 262