Pairwise Alignments

Query, 439 a.a., porin from Pseudomonas simiae WCS417

Subject, 450 a.a., putative Porin from Pseudomonas putida KT2440

 Score =  364 bits (935), Expect = e-105
 Identities = 211/432 (48%), Positives = 268/432 (62%), Gaps = 30/432 (6%)

Query: 27  FLSDSKANLSMRNFYFNNDNRDGTAAPSKTEEWGQAFILNYQSGFTDGTVGFGLDAIGML 86
           FL DSKA++S R  Y++ D R    A  +    G    L++QSG+T+G VG GLD   + 
Sbjct: 28  FLDDSKASISSRTLYYDGDQRSTGGADQRQTLTGLR--LDFQSGYTEGVVGLGLDLQALA 85

Query: 87  GITLDSGAGRHVGSSMIP----NDDGKATDNWARGGATAKARFAKSELRYGY-LRPNLPI 141
           G TL  G   H  S++        DG   DNW+R G  A+ +++K+EL+ G  L  NLP+
Sbjct: 86  GFTLSGGTSPHNASTVNTVSPVTTDGSPVDNWSRIGGNARFKYSKTELKAGNALTFNLPV 145

Query: 142 LVSNDGRLLPQSFDGGQITSKDIDNLTLIGGQLQHTTGRGSSDRSGLAVAGGTQESNTFN 201
           L+SNDGRLLP SF G  +TS + +NLTL GG L    GR SS+ +G++  GG + S+ F 
Sbjct: 146 LISNDGRLLPASFQGAALTSNEFENLTLNGGFLNRAIGRASSNWAGIS-GGGAKGSDGFA 204

Query: 202 YAGADYQVTKDLMLQYYYANLEDYYQQHFAGLIHVLPLGDYGSLKTDLRYFKTTSDGKNS 261
           +AG D+ V K+L LQYYYANLEDYY Q+F GLIH   +G   SL TDLRYFK+ SDGKN 
Sbjct: 205 FAGGDWNVRKNLKLQYYYANLEDYYSQNFLGLIHSFDMGVGQSLTTDLRYFKSDSDGKN- 263

Query: 262 SVAGRAEGYKL-GGYTKNGTGEIDNNTWSAAFIYSLGPHAITAGYQQVSDDSNFAQLNQG 320
              G    Y L  GY +N  G+IDN TWS AF Y  G HA+T G+QQVSD S FA +N  
Sbjct: 264 ---GTDSRYALRNGYNEN--GKIDNTTWSLAFTYKAGGHALTLGHQQVSDKSGFATVNSS 318

Query: 321 GLVN-----KGEGG-SSLYLYTDRTVQTFIQAGERTAFAQYAYDFASLGVPGLKASVMYL 374
            +V+     +GEGG  SLYLYTD  V +F +AGE + F  Y+YDFA+LGVPGLKA   Y+
Sbjct: 319 NVVDGRGRPEGEGGVQSLYLYTDVMVNSFTRAGENSTFGLYSYDFAALGVPGLKAGWTYV 378

Query: 375 KGDHILTASGNDA----SEWERDISLDYVVQSGTFKNVGFGWRNGVSRS----EVARDQD 426
            G  I   +GN      +EWE D  LDYV+QSGTFK +GF  R GV R+       +DQD
Sbjct: 379 SGKDI-RGTGNTTTGRYNEWESDYRLDYVLQSGTFKGLGFTLRKGVFRTGLPDSTLKDQD 437

Query: 427 QNRVFVNYSIPL 438
           Q R FVNY+  L
Sbjct: 438 QVRFFVNYTYAL 449