Pairwise Alignments

Query, 367 a.a., recombinase RecF from Pseudomonas simiae WCS417

Subject, 357 a.a., DNA recombination and repair protein RecF from Sphingobium sp. HT1-2

 Score =  109 bits (272), Expect = 1e-28
 Identities = 97/349 (27%), Positives = 152/349 (43%), Gaps = 22/349 (6%)

Query: 3   LSRVSVTAVRNLHPVTLSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPVIQ 62
           + R++++  RN     + P     +L G NG+GKT++LEA+ +L   R  R A L  + +
Sbjct: 2   IGRLTLSDFRNHADALIVPDQPFVLLTGDNGAGKTNILEAVSMLAPGRGLRGAALRAMAR 61

Query: 63  YEQLACTVFGQVELAEGGHSSLGISRDRGGEFQIRIDGQNARSAAQLAEILPLQLINPDS 122
            +      FG     +G     G+S D     Q+RI G  A SA  LA+ L +  + P  
Sbjct: 62  QDGGGS--FGIAAEVDGVVLGTGVSVDAPDRRQVRIGGV-ASSANALADHLSIVWLTPAM 118

Query: 123 FRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRH---------GTLDA 173
            RL   +P  RR+FLD     + P   A   R + A+R RN  L           G L+A
Sbjct: 119 DRLFLDSPGGRRRFLDRLTLALHPGHAAHSARYEAAMRARNRLLTDLRRADPAWIGALEA 178

Query: 174 ASQAAWDRELCLASDEIDEYRRAYIKALKPVFEQTLSELLELEGLTLSYYRGWDKERELS 233
                        +D +    R  +      F + L  +   +G +         +  L 
Sbjct: 179 QMDEHGTALAAARADLVARLNRQLVDQPDEPFARPLIRIAREDGAS---------DEPLG 229

Query: 234 AVLATSLQRDQQIGHTQAGPQRADLR-LRLGAHNAADILSRGQQKLVVCALRIAQGHLVS 292
             LA   +RD   G T +GP R DL  + +  + AA + S G+QK ++ ++ +A   LVS
Sbjct: 230 QRLARERRRDAAAGRTLSGPHRHDLDVIHIAKNQAAALCSTGEQKALLLSILLAHAALVS 289

Query: 293 QARRGQCIYLVDDLPSELDEQHRRALCRLLEELRCQVFITCVDHELLRE 341
             R    + L+D++ + LD   R AL   L E   QV++T  +  L  E
Sbjct: 290 ADRGQPPVLLLDEVAAHLDPSRRAALFDRLRETGGQVWMTGTEDSLFNE 338