Pairwise Alignments

Query, 595 a.a., type VI secretion protein from Pseudomonas simiae WCS417

Subject, 623 a.a., T6SS component TssF (ImpG/VasA) from Variovorax sp. SCN45

 Score =  252 bits (643), Expect = 4e-71
 Identities = 193/635 (30%), Positives = 312/635 (49%), Gaps = 68/635 (10%)

Query: 6   YYQSELSALRQLGRQFSERNPALAPFLAEAG---QDPDVERLLEGFAFLTGRLRQKLDDE 62
           YY  EL+ + +LG +F++R P +A  L   G    DP VERLLEGF+FLT R++ K+D E
Sbjct: 8   YYNRELTYMHELGAEFAQRYPKIAGRLGMRGIEVSDPYVERLLEGFSFLTARIQLKMDAE 67

Query: 63  LPELTHSLMHLLWPNYMRPMPAFSMLQFDPLKHSGPDVC---VARGTPVESAAVNGER-- 117
            P  +  L+ +++PN++ P+PA +++Q D   + G       + R T +    + GE+  
Sbjct: 68  FPRFSQRLLEVVYPNFLAPLPAMAVVQIDGNLNEGSLKAGYELPRHTILRGRMIKGEQTA 127

Query: 118 CRFRTCYATQVLPLRLSALEYG-------------SRAGRGMLSLRLEMSAEGNFSEWTL 164
           C FRT +A  + P+R++    G             +R  +  L++R+E      FSE  +
Sbjct: 128 CEFRTGHAVTLWPVRIADAGIGPVPAEIAHAMPAVARQAKSALTIRIEAVGGARFSEMPI 187

Query: 165 NRLRLHFAGDRYISQELYLGLLRHLEGIELLPLGHDGLPVNGVDGQALSLRLGADQVQPV 224
            RL    +G         L  LR LE +    +G   +  +G  G A  + LG D ++  
Sbjct: 188 ERLEFFLSGAE-------LHALRVLELVAHHAVGT--VCRSGPGGNARIVPLGDDAIRHE 238

Query: 225 GFSEEQALIPYPQNTFPGYRHLQEYFAFPDKYLFVDVGGLGVLQELPVELLKQVSGVMLR 284
           GFS +QAL+PY   +F GYR L EYFAFPD+YLF  V  L    +        +SG  + 
Sbjct: 239 GFSPDQALLPYDARSFQGYRLLHEYFAFPDRYLFFSVNKLRAAAQ-------AMSGSTME 291

Query: 285 FEL---RSPWGESRQPTLENVKLYCTPIVNLFKHDAVPIRLDGKQDEYLLVPGEYSRENA 341
             +   R+     R    ++  L+CTPI+NL    +  I +   Q E+  V       + 
Sbjct: 292 IVILLDRADADLERLVDAKHFSLFCTPIINLVPRRSDRIPVGPGQHEHHAVIDRTRPRDF 351

Query: 342 SVFSVDSVTGWQPGGRGYKTYVPF-ESFEHDVDNDLSDGPASYSIRQRP----------- 389
            +F+V+ VTG    G   + + PF  SF  D D D     A +S+R+ P           
Sbjct: 352 EIFTVERVTGHMANGSEEREFRPFLGSFAAD-DGDFG---AYFSLRREPRLVSDRARAQG 407

Query: 390 -STQHAGLETWLAFGNGPGS----AQQTLSIELTCTNHNLPRLLQLG-DINLPCEQTPEG 443
             T + G E +++  +   +    + + ++++  CTN +LP LL  G + +     +   
Sbjct: 408 TRTSYTGSEVYVSLVDQHDAPFPHSLRHITLDALCTNRDLPLLLPTGLESDFTLRVSAPV 467

Query: 444 LSFRNICAPTASFPPPLDQDFLWRLISNLSLNYLSLSDINALKVILQTYDLPRYHDRQAQ 503
            S R +  P+  +P   +    WRLIS+L LNYLSL+D++A +      ++   +   A 
Sbjct: 468 RSIRILRGPSRPYPALAEGALTWRLISHLGLNYLSLTDVDAAQGAAALREMLDLYGNLAD 527

Query: 504 KISERKLGAMRSVSHTAV-DRLHRGLPF---RGIRIDLSIDPQGFLGHGEVFVFASVLNE 559
               R++  +RS++   V  RL    P    RG+ I L ID   F G    ++F +VL +
Sbjct: 528 PSVRRQIQGVRSMALAPVFRRLPEPGPIVFGRGVEIALKIDEVAFSG-ASPYLFGAVLEQ 586

Query: 560 FFALYASLNAYHELRVTSTQ-GDVYLWPPRMGQQP 593
           FF+ + SLNA+ E  ++S Q G++  W PR+G++P
Sbjct: 587 FFSRHVSLNAFTEFALSSLQRGEIARWTPRVGRRP 621