Pairwise Alignments

Query, 595 a.a., type VI secretion protein from Pseudomonas simiae WCS417

Subject, 588 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  393 bits (1010), Expect = e-113
 Identities = 225/606 (37%), Positives = 334/606 (55%), Gaps = 29/606 (4%)

Query: 1   MSFNRYYQSELSALRQLGRQFSERNPALAPFLAEAGQDPDVERLLEGFAFLTGRLRQKLD 60
           MS    +  EL  L +LG  F++ NP LA  L +AG DPDVERL+E FAFLT +LR KL+
Sbjct: 1   MSLKDRFSEELRYLHELGNDFAKDNPQLARLLGKAGSDPDVERLMEAFAFLTAKLRLKLE 60

Query: 61  DELPELTHSLMHLLWPNYMRPMPAFSMLQFDPLKHS-GPDVCVARGTPVESAAVNGERCR 119
           D+LPELTH ++ +LWPNY+RP+P+ ++++F P K S      + +G  + S  V+   C 
Sbjct: 61  DDLPELTHPMLQILWPNYLRPLPSATIIRFSPRKQSLSQSQHIPKGARLFSKPVDAVPCE 120

Query: 120 FRTCYATQVLPLRLSALEYGSRAGRGMLSLRLEMSAEGNFSEWTLNRLRLHFAGDRYISQ 179
           FRTC    + P  +SA+         ++ + L+   E   +     RL  H +GD   + 
Sbjct: 121 FRTCTGVSLHPFEISAVSATQTLDSSVVRIGLQTLVERPLNTLGCARLDFHLSGDNRTAL 180

Query: 180 ELYLGLLRHLEGIELLPLGHDGLPVNGVDGQALSLRLGADQVQPVGFSEEQALIPYPQNT 239
            LYL + ++L+ + ++  G                RL A+ +   GFS E+AL+PYPQN 
Sbjct: 181 TLYLWISQYLKHVSVIMNGE-------------VRRLPANSIGFPGFSPEEALLPYPQNV 227

Query: 240 FPGYRHLQEYFAFPDKYLFVDVGGLGVLQELPVELLKQVSGVMLRFELRSPWGESRQPTL 299
           F GYR LQEYF FP ++ F  + GL  L   P +   QV G+   F  + P  ++ +   
Sbjct: 228 FDGYRILQEYFVFPKRFHFFSITGLEKLW--PAQACPQV-GIEFHFTRQLP--DTLRVGT 282

Query: 300 ENVKLYCTPIVNLFKHDAVPIRLDGKQDEYLLVPGEYSRENASVFSVDSVTGWQPG---- 355
           E+  L+CTP VNLFKH A PI L  +  +  L P   ++    +FSVD V   +      
Sbjct: 283 EDFSLFCTPAVNLFKHSAEPIDLASEAAQVELKPRSEAQSAYEIFSVDEVISTRTTTDGS 342

Query: 356 -GRGYKTYVPFESFEHDVDNDLSDGPASYSIRQRPSTQHAGLETWLAFGNGPGSAQ---- 410
            G   +T+ PFESF H++++        Y  +   S +  G+   +AF     ++     
Sbjct: 343 TGEHLRTFRPFESFAHEIEHVQGRTALYYRCQLEASLRGDGVTHRIAFVRADANSYIGEL 402

Query: 411 QTLSIELTCTNHNLPRLLQLGDINLPCEQTPEGLSFRNICAPTASFPPPLDQDFLWRLIS 470
           +T SI+LTCTN +LP  L + DIN+  E TP   ++ NICAPT  + P LD    W LIS
Sbjct: 403 ETASIDLTCTNRDLPLALGVDDINVLTEVTPPLATYTNICAPTRPYRPVLDGQLQWALIS 462

Query: 471 NLSLNYLSLSDINALKVILQTYDLPRYHDRQAQKISERKLGAMRSVSHTAVDRLHRGLPF 530
           N+SLNYLSL  +  LK +++TYD    HD Q  + + ++L  +R +    +D L +G P 
Sbjct: 463 NMSLNYLSLLSVEPLKAVIRTYDFAALHDIQQARTTGKRLDGIRELHTQPMDWLIKGQPI 522

Query: 531 RGIRIDLSIDPQGFLGHGEVFVFASVLNEFFALYASLNAYHELRV-TSTQGDVYLWPPRM 589
           RG+   L +D   FL  G++++F  VL  FFALYAS+N++H+L V  +T  + Y WP + 
Sbjct: 523 RGLHTQLKLDQAAFLCEGDLYLFGCVLAHFFALYASINSFHQLEVINTTNNEHYTWPIQT 582

Query: 590 GQQPLL 595
           G+QPL+
Sbjct: 583 GKQPLI 588