Pairwise Alignments

Query, 595 a.a., type VI secretion protein from Pseudomonas simiae WCS417

Subject, 604 a.a., type VI secretion system baseplate subunit TssF from Erwinia tracheiphila SCR3

 Score =  389 bits (1000), Expect = e-112
 Identities = 234/623 (37%), Positives = 330/623 (52%), Gaps = 47/623 (7%)

Query: 1   MSFNRYYQSELSALRQLGRQFSERNPALAPFLAEAGQDPDVERLLEGFAFLTGRLRQKLD 60
           M+  +Y+  E+  LRQL R  ++  P LA FL+E G DPDVERLLEG AFL G LR+K+D
Sbjct: 1   MALEKYFTDEMDYLRQLARVVAKEKPYLAAFLSEKGSDPDVERLLEGMAFLAGNLREKID 60

Query: 61  DELPELTHSLMHLLWPNYMRPMPAFSMLQFDPLKHS-GPDVCVARGT-----PV------ 108
           DE PELTH L+++LWPNY+RP+P+ +++++ P K S      V RGT     PV      
Sbjct: 61  DEFPELTHGLLNMLWPNYLRPVPSMALIEYTPQKDSISAATRVTRGTRLLSQPVYTHSHD 120

Query: 109 ----ESAAVNGERCRFRTCYATQVLPLRLSALEYGSRAGRGMLSLRLEMSAEGNFSEWTL 164
                S++  G  C F       +LPL L A+   +     ++ +    S E + +   L
Sbjct: 121 EPQQRSSSSGGFHCTFTQSRDLWLLPLTLDAITVTNSNEMAIMDMVFSASEENSLNALAL 180

Query: 165 NRLRLHFAGDRYISQELYLGLLRHLEGIELLPLGHDGLPVNGVDGQALSLRLGAD-QVQP 223
           ++LR       Y S +LY     +L+  EL+           VD   + L   AD    P
Sbjct: 181 DKLRFGLGESGYNSFQLYFWFSYYLQKAELV-----------VDNSVIEL---ADFDFVP 226

Query: 224 VGFSEEQALIPYPQNTFPGYRHLQEYFAFPDKYLFVDVGGLGVLQELPVELLKQVSGVML 283
            GF  E AL+P+P+N   GYR LQEYF FP+ +LF DV G+    +       +     L
Sbjct: 227 SGFEREDALLPHPKNAAMGYRILQEYFCFPENFLFFDVKGIPRFADDI-----RADQFSL 281

Query: 284 RFELRSPWGESRQPTLENVKLYCTPIVNLFKHDAVPIRLDGKQDEYLLVPGEYSRENASV 343
           R     P     +   E ++L+C P VNLF H +  I LDG Q +Y L       +   +
Sbjct: 282 RLYFNRPLPPEVKVRCETIRLHCVPAVNLFSHHSESILLDGTQAQYPLQVSHLDPDLYDI 341

Query: 344 FSVDSVTGWQPGGRGY------KTYVPFESFEHDVDNDLSDGPASYSIRQRPSTQHAGLE 397
           FSVD V  W    +        + Y PFESF H ++         Y IR R S   AGLE
Sbjct: 342 FSVDKVQSWLKNDKNQSIHGVLREYAPFESFHHQMEYARGRTKLYYRIRSRQSLFRAGLE 401

Query: 398 TWLAFGNGPGSA----QQTLSIELTCTNHNLPRLLQLGDINLPCEQTPEGLSFRNICAPT 453
             ++F  G  +      +T+S+ LTCTN  +P  L++ DI +  +  P   +FRNI  PT
Sbjct: 402 HHISFVRGDETQCVLRDETVSVSLTCTNRKVPISLRVADITIQTDDHPSFATFRNITRPT 461

Query: 454 ASFPPPLDQDFLWRLISNLSLNYLSLSDINALKVILQTYDLPRYHDRQAQKISERKLGAM 513
           A   P LD    W LISN+SLNYLSL D +AL  IL++YDLP  +DRQA + S+++L  +
Sbjct: 462 APLYPVLDGSLHWSLISNMSLNYLSLLDRDALCQILRSYDLPAMNDRQAARASQKRLDGI 521

Query: 514 RSVSHTAVDRLHRGLPFRGIRIDLSIDPQGFLGHGEVFVFASVLNEFFALYASLNAYHEL 573
             +    VDRL RG+P RG+   L ++   F   GE+++F S+L  FF+LYAS+NA+H L
Sbjct: 522 LRIETKPVDRLFRGVPVRGLATTLWLEQSAFSCEGELYLFGSILARFFSLYASVNAFHLL 581

Query: 574 RV-TSTQGDVYLWPPRMGQQPLL 595
            V  ++  + Y WP + GQ PL+
Sbjct: 582 TVINASNKECYQWPVQTGQHPLI 604