Pairwise Alignments

Query, 595 a.a., type VI secretion protein from Pseudomonas simiae WCS417

Subject, 625 a.a., type VI secretion system baseplate subunit TssF from Erwinia tracheiphila SCR3

 Score =  154 bits (390), Expect = 8e-42
 Identities = 168/672 (25%), Positives = 272/672 (40%), Gaps = 130/672 (19%)

Query: 3   FNRYYQSELSALRQLGRQFSERNPALAPFLAEAG---QDPDVERLLEGFAFLTGRLRQKL 59
           F  YY  EL  ++++  +F+ ++P +A  L   G    DP VERL+E F FL+ R + KL
Sbjct: 5   FLDYYNRELIFMKEMSHEFAIKHPKIAARLGMQGIEVADPYVERLIEAFCFLSARTQIKL 64

Query: 60  DDELPELTHSLMHLLWPNYMRPMPAFSMLQFDPLKHSGPDVCVARGTPVESA----AVNG 115
           D E P  T  L+ +++PNY  P P+  ++Q  P    G D+      P  SA     + G
Sbjct: 65  DAEFPNFTQRLLDIVYPNYNSPTPSMGVVQLTPNLKEG-DLTRGYRVPKNSAFYTKILPG 123

Query: 116 E--RCRFRTCYATQVLPLRLSALEYGSRAGRGMLSLRLEMSAEGNFSEWTLNRLRLHFAG 173
           E  RC FR      + P++++     S          LE     N       R++L    
Sbjct: 124 ENSRCEFRNSQEVTLWPIKITEARLTSIPPD---LPNLERYRISNSKLKGALRIKLQLQN 180

Query: 174 DRYISQELYLGLLRHLEGIELLPLGHDG--------LPVNGVDGQALSLRLGADQVQPV- 224
           D+  SQ         L+G++ LPL  DG          +      A+ +R G  + Q V 
Sbjct: 181 DQTFSQ---------LQGLQELPLYIDGDEVVVSHIFELVHTSNVAMIIRSGGTKEQDVI 231

Query: 225 ---------GFSEEQALIPYPQNTFPGYRHLQEYFAFPDKYLFVDVGGLG---------- 265
                    G   +Q L+P   N F G+  + EYFA   ++ F  +  L           
Sbjct: 232 VNQKPLAFEGLKPDQTLLPMAWNMFHGHNLIHEYFACRQRFYFFTLTQLEQGFRNNHSNE 291

Query: 266 -----VLQELPVELLKQVSGVMLRFELRSPWGESRQPTLENVKLYCTPIVNLFKHDAVPI 320
                +L  LP  L+  V                         L+CTP++NLF      I
Sbjct: 292 AELIILLDRLPQHLIGHVDP-------------------SRFLLFCTPVINLFSKVVDRI 332

Query: 321 RLDGKQDEYLLVPGEYSRENASVFSVDSVTGWQPGGRGYKTYVPFESFEHDVDNDLSDGP 380
            ++   + + +VP      +  +FSV+ V G Q        + P     H    D  +  
Sbjct: 333 EINRALNSFHVVPDRSRPMDFEIFSVNKVLGQQAERSDEIVFNPLYQTRH---CDYGNFG 389

Query: 381 ASYSIRQRPSTQ------------HAGLETWLAF---GNGPGSAQ-QTLSIELTCTNHNL 424
             +SI++   T+            + G E +++       P S   + L++E   TN +L
Sbjct: 390 RYFSIQREARTKEVTKRKYDTRTPYLGTEVFVSLVDQQEAPYSDHIRYLTVEAMVTNRDL 449

Query: 425 PRLLQLG---DINLPCEQTPEGLSFRNICAPTASFPPPLDQDFLWRLISNLSLNYLSLSD 481
           PRL+      D+++       G +F  IC P+A   P    +  WRLI  LS NYL LSD
Sbjct: 450 PRLISRNSSYDLSMSDAVPISGATF--ICKPSAPRAPFAIGESAWRLIRQLSFNYLPLSD 507

Query: 482 I----------NALKVILQTYDLPRYHDRQAQKISERKLGAMRSVSHTAVDRLHRGLP-- 529
           +          N L++ L + D                +  + S+     + + R LP  
Sbjct: 508 MEHSLGGESLRNMLRLFLNSSD-------------NESISQVNSLIGCKSEPVTRRLPGD 554

Query: 530 -----FRGIRIDLSIDPQGFLGHGEVFVFASVLNEFFALYASLNAYHELRVTSTQ-GDVY 583
                 RG+R  L++D +GF G    ++F  ++  + + +A++N + E ++ S Q G V 
Sbjct: 555 GLLVYGRGVRCTLTVDEEGFSGMSP-YLFGLIMENYLSRHAAINVFTETQLHSMQRGLVA 613

Query: 584 LWPPRMGQQPLL 595
            W  R G++  L
Sbjct: 614 SWQGRPGKRGAL 625