Pairwise Alignments

Query, 337 a.a., type VI secretion protein from Pseudomonas simiae WCS417

Subject, 338 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  167 bits (424), Expect = 3e-46
 Identities = 107/319 (33%), Positives = 162/319 (50%), Gaps = 11/319 (3%)

Query: 7   AAAPALTRLSLSIREYSLFQAVLQVIKRLRVAH-----PLLDEDALYDLLEFHANPGLGF 61
           A A    +L  +  +Y+ FQ    +++RL   H     P   ++A    +   ++P L F
Sbjct: 8   ATADLADKLLANAHQYNFFQ----LLERLHGLHGDDLEPRWADEATRLRVRLASDPRLTF 63

Query: 62  PGHDIDRVEFFIEHEQLRARLRLNLLGLCGAGSPLPAFYGEQACADGVGGNTTRD-FLDV 120
           P  D+ + E  +  E  R R+    +GL G  SPLP +Y EQ   +   G   R  F D 
Sbjct: 64  PVSDVYKAER-MPGEDERYRVCTTFMGLHGTDSPLPTYYLEQVAYEHAQGVGVRPAFFDF 122

Query: 121 FHHRLQRLMLPVWRKYRYRARFQAGARDTFSEQMFALIGLSGQQIRSIARLNCERLLPYL 180
           F+H L  L+  +WRKYRY  RFQ GARD FS+ MFAL+GL+ +Q+R    L   RLL + 
Sbjct: 123 FNHYLLSLLHRIWRKYRYYIRFQPGARDGFSQYMFALLGLNDKQLRGDTTLPWSRLLSFA 182

Query: 181 GMLGLRSHSASLIETVLRYYFKHHRLFIEQWVLRTVVIDDPQRNRLGNANSVLGHDQVLG 240
           G++  R  +   +  ++ + F    + I ++  RTV  +  Q   LG +N  LG   ++G
Sbjct: 183 GVIASRGRAPGTVAGIIAHCFDLTHVQIREFETRTVTTNSKQLVSLGRSNGELGSTFMVG 242

Query: 241 CRVADRSGKFRVHLQGLGWQQLHGFLPTGADYPLLCSLVRLTARDPLEYDLRLVLAKEEI 300
            R   RS KF + +  L   QLH  LP+G ++  L +L+    RD L YDL L L +  +
Sbjct: 243 SRTRTRSSKFTILISELDQAQLHDLLPSGINFGRLRALIDFLLRDGLAYDLELRLKQNAL 302

Query: 301 RPLHIGEHNVCGLGWTSWL 319
            P ++       LGWTS++
Sbjct: 303 SPFYLHRSQGAYLGWTSFV 321