Pairwise Alignments

Query, 337 a.a., type VI secretion protein from Pseudomonas simiae WCS417

Subject, 356 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score = 96.7 bits (239), Expect = 8e-25
 Identities = 88/333 (26%), Positives = 135/333 (40%), Gaps = 15/333 (4%)

Query: 1   MATTDGAAAPALT-RLSLSIREYSLFQAV-LQVIKRLRVAHPLLDEDALYDLLEFHANPG 58
           MA+T   +AP L  +       +  FQ V L  +   R     L      D L F     
Sbjct: 1   MASTHRRSAPGLIDQARAEPHRFEFFQLVRLLRLHYSRTGRMDLATRPHEDPLRFRTQLS 60

Query: 59  LGFPGHDIDRVEFFIEHEQLRARLRLN-----LLGLCGAGSPLPAFYGEQACADGVG--G 111
           L FP  ++  + F  E +   A L L+      +GL G    LP  Y E      V    
Sbjct: 61  LAFPASEVSDLHFEREGKVSPAGLPLSEVQVTFMGLVGPSGVLPRPYTELLLERHVQYRD 120

Query: 112 NTTRDFLDVFHHRLQRLMLPVWRKYRYRARFQAGARDTFSEQMFALIGLS--GQQIR--- 166
           +    FLD+F HR+  L    W+KY++    +      F   +  L+GL    Q+++   
Sbjct: 121 DAAHAFLDIFSHRMTTLFYEAWQKYKFHIEHERNGTSGFDGYLLNLVGLGPRAQKLKFEE 180

Query: 167 SIARLNCERLLPYLGMLGLRSHSASLIETVLRYYFKHHRLFIEQWVLRTVVIDDPQRNRL 226
             + L  E    + G+L  +  +A  +E +L +YF    + ++ +  R + +   Q  +L
Sbjct: 181 QPSALRRELFSYFAGLLSQKPRNALNLERMLGFYFSLP-IKVQPFAGRWLHLQPEQCTQL 239

Query: 227 GNANSVLGHDQVLGCRVADRSGKFRVHLQGLGWQQLHGFLPTGADYPLLCSLVRLTARDP 286
           G  N+ LGH  V G RV D     R+ L  L       F P  A Y  L  LVR      
Sbjct: 240 GRRNAQLGHSAVAGNRVWDYQSCIRIELGPLSLADYQRFQPGTACYRKLVELVRFYIGAE 299

Query: 287 LEYDLRLVLAKEEIRPLHIGEHNVCGLGWTSWL 319
           L++++   L +E +    +G      LGW  WL
Sbjct: 300 LDFEIAPRLKREAVPRAQLGRSGNVALGWLGWL 332