Pairwise Alignments

Query, 337 a.a., type VI secretion protein from Pseudomonas simiae WCS417

Subject, 359 a.a., hypothetical protein from Escherichia fergusonii Becca

 Score = 87.0 bits (214), Expect = 6e-22
 Identities = 93/349 (26%), Positives = 146/349 (41%), Gaps = 27/349 (7%)

Query: 5   DGAAAPALT----RLSLSIREYSLFQAVLQVIKRLRVAHPLLDEDA-LYDLLEFHANPGL 59
           D A+ PA T    RL+  I   + ++   Q++++ +   PL   D+   D + F  +PG+
Sbjct: 2   DRASQPARTGLTDRLAPDIARINFYR-FCQLLEQSQQNAPLGSTDSPATDAVRFRPHPGM 60

Query: 60  GFPGHDIDRVEFFIEHEQLRARLRLNLLGLCGAGSPLPAFYGEQACADGVGGNTTRDFLD 119
           GFP  ++  VE    +      +R   LGL G  SPLP  Y +       G +    FLD
Sbjct: 61  GFPVSELKNVERDAGNPDAPPTVRTTFLGLYGVDSPLPTAYLDYITQRHDGHDAVMAFLD 120

Query: 120 VFHHRLQRLMLPVWRKYRYRARFQAGARDTFSEQMFALIGLSGQQIRSIARLNCERLLPY 179
           +F+HR       +WRKY Y A F+AGA D  S  +  LIGL      +       R L  
Sbjct: 121 IFNHRFITQYYRIWRKYNYPASFEAGAVDDISRCLLGLIGLGIPGSENHIATPVSRFLAL 180

Query: 180 LGMLGLRSHSASLIETVLRYYFKHHRLFIEQWVLRTVVIDDPQRNRL-------GNANSV 232
           L ++ L + +A  +  ++          +      TVV  DPQ   L        N+   
Sbjct: 181 LSVMRLPTRTAEGVTALVG--------LLAPLTKATVVPHDPQPVILPAPAGLSKNSRIS 232

Query: 233 LGHDQVLGCRVADRSGKFRVHLQGLGWQQLHGFLPTGADYPLLCSLVRLTARDPLEYDLR 292
           L    +LG    D + +  + L      +  G+LP G  +  L  L+R+      +  L+
Sbjct: 233 LKTRTLLGRTGTDVNSQLLLKLYTEDAAEARGWLPDGQLHSDLLVLLRVYLGWRCQARLQ 292

Query: 293 LVLAKEEIRPLHIGEHNV----CGLGWTSWLAHECADGVVMVSGNAHEG 337
           L L    +    +G+  V     G+   S+ A   A G V VS   ++G
Sbjct: 293 LTLPVSLLPAARLGKQRVQISRTGILRASFAAP--ATGTVTVSLGRYQG 339