Pairwise Alignments

Query, 442 a.a., type VI secretion protein from Pseudomonas simiae WCS417

Subject, 445 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  247 bits (630), Expect = 6e-70
 Identities = 157/441 (35%), Positives = 239/441 (54%), Gaps = 7/441 (1%)

Query: 6   VIWQEGMLLRPQHLQHNDRYYHRQLNRTRLLSSDA--WGFLTLDLDLQYLNLGKVVVNQA 63
           V+W EG+ ++PQH Q   R     L++ RL S +A  +GF  L L+ +YL+LGKV + +A
Sbjct: 7   VLWPEGLFVKPQHFQQAARASEAALHQ-RLASLNAAFYGFSELQLNDEYLSLGKVAITRA 65

Query: 64  SGVLPDGSLFELSGAMEPLV-LQVPANAGRQA-VYLALPLATENQVEVRRKEQSDVLARY 121
            GV+PDG++F++   + P   L++  +A + + VYL LPL T+   EV   + +    RY
Sbjct: 66  RGVMPDGTVFDIPADLPPPPPLEIGDDACQDSEVYLCLPLRTDGGREVSWPDNAANF-RY 124

Query: 122 VACETEIGDSNAGADSRCQINCARPDLRLMLGEGPSDAFYVKLQVAQVQDSTREDGVSLD 181
            A   EI D+++      Q++ A P+L+L      S A Y +L +A++ +   +  + LD
Sbjct: 125 TAQVQEIKDTHSADGDLVQVDLAVPNLQLKRKTEDSSA-YTRLALARILERRPDGSLQLD 183

Query: 182 ADFVPTFIYLQGTGYVSSCIKEVISLLATRGDAIAARIQGSGASTGAQVGDFLMLQLINR 241
             F PT + ++    +   ++E+   L  R   +A RI  SG S  A + DF +LQ +NR
Sbjct: 184 EAFYPTSVSVRAVPALQRFLEEITHTLRERARGLATRIGASGQSGIADIRDFNLLQAMNR 243

Query: 242 AELILRHYLVQAQVRPERLYRELLSILGELSTFANDNKRAQLAVHYRHGDQGASFRGLME 301
                +H   QAQ  PE+LY  +    GE  TF + N+  Q    Y H     SF+ L +
Sbjct: 244 WWPCFQHLARQAQTHPEQLYLCMSQACGEFVTFTDQNRLPQEYPAYHHTALRTSFKPLED 303

Query: 302 GLRTVLSSVLEQHAIELVLQQRQYGVLVCPVSDLKLLGTATFILAATAQCDSEELRHRLP 361
            LR  LS+VL   A+ L L+  Q+GV+   + D +L+  A FILA  A    + LR    
Sbjct: 304 TLRRSLSTVLRPRAVSLPLESEQFGVMTTTLEDRRLIDEADFILAVRASMPPQALRQMFI 363

Query: 362 AHLKIGPVERIRELVNLHLAGIKVQPLPVAPRQIPYHAAKTYFMLELSPRDIAQLEQSGG 421
              KI  +E + +LV L L GI + PLPVAPR +P+HA  +YF L+      A + ++ G
Sbjct: 364 QKAKITSLESLNDLVPLQLPGIPLLPLPVAPRDLPFHAGFSYFELDRRDPAWACMSKANG 423

Query: 422 FAFHASGEFAELELNFWAIRN 442
           F  H +G+F  LEL FWAIR+
Sbjct: 424 FGIHIAGDFPGLELQFWAIRS 444