Pairwise Alignments

Query, 1111 a.a., type VI secretion protein VasK from Pseudomonas simiae WCS417

Subject, 1208 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score =  265 bits (676), Expect = 2e-74
 Identities = 311/1207 (25%), Positives = 495/1207 (41%), Gaps = 156/1207 (12%)

Query: 20   LLLVLSCALL---VWFFGPLLAVDDYRFWQSPTSRLLTISGLLLLWGLAMVGMGARRTAR 76
            LLL L   L+   +W+ GP     D +   S   R +     +L+  L+ + +   R  R
Sbjct: 25   LLLGLGAVLMLVAIWWLGPQWTWRDQQPLASVAHRSMASLVFVLVALLSWLVVLRTRFRR 84

Query: 77   LNQPEEHERHQRRALINEEIRQ-VRARFKEALQALKTSRRY----GERSERWRDELPWYL 131
            L    + ER Q  A   +  +  V A+ K   Q L    RY    G R   +R  LPWYL
Sbjct: 85   L----QAERQQAMAAEVDPTQPFVHAQEKALSQGLA---RYLDNAGGRRALYR--LPWYL 135

Query: 132  LIGEQGSGKTSLLAASGLPSPFDHPDAA-----PLGAASW-CDWYFAEDAVLVEAAGRYL 185
            ++G + +GK+S +  +         D A     P  A ++   W+ + DAV+++  G ++
Sbjct: 136  VLGARQAGKSSFIDCTDQSFSLTRIDKAQARGRPAQALAYPVGWWISNDAVIIDPPGAFI 195

Query: 186  GQPDPSVDAAG------------------WSTLLDLLKWRRRSRPLNGVVVTLSADTLSS 227
             Q  P+ D+ G                  W  LLD L+  R  R LNG+V+ +    L  
Sbjct: 196  SQNGPA-DSLGSDSTDVESSVPSGTQAKLWQHLLDWLQRNRSQRALNGLVLVVDLPALLH 254

Query: 228  SNEHDLERHARHVRTRLQDIQQTLHVDVPVYLVLTQSDRLAGFAEFFDAQQGDGTEQVLG 287
                     A  +RTRL ++   L   +P+Y+VL++ D L GF +F+          + G
Sbjct: 255  GTVEQRTALAHLLRTRLYEVSSQLGSRLPLYVVLSKFDLLDGFDQFYSKLSAAKRNSLFG 314

Query: 288  GDLGTD--------LAQVRDVFENLLQRLGGDLIPRLHQERNVERRGHMLDFPRQVARIG 339
                 D        L +  + ++ LL++L   +I RL  + +   R  +    RQ+  + 
Sbjct: 315  FTFKLDAVDTFDAWLGEYGEHYDRLLEQLFEQVIDRLDVQGSPALRSRLYSLHRQLLGLR 374

Query: 340  DALCLFIEAAFSVNRNQPINALRGFY-LTCAKTVDVR----------------------- 375
              L  F+    + +R      +RG Y  +  +  DVR                       
Sbjct: 375  PMLLSFLRETLASDRFTTPALVRGVYWSSVVQHGDVRNAFVREAAQPYKTSLPLLEGKPQ 434

Query: 376  ----PHFVQGLFKRVIFAEADQAGLLTPERQRIHRRHG---WMALAATVVIGTVGAVWAH 428
                 +F+Q  F RVI+ EA  AG    +  R+ RR     W+  +  V+   V     H
Sbjct: 435  AKALAYFIQQAFGRVIYKEAGLAG----DNVRVARRKRQLLWVGSSVGVLAFCVAIASWH 490

Query: 429  SYSFNHQRLLQLTGLIHTQTGTPPGADE-----SHALLTLLDSRLAATQVFSPQAQARW- 482
             Y F+   +   + L  ++  +    D+        LL  LD    A  VF    +A W 
Sbjct: 491  RY-FDINGVKAASVLAKSREYSHHEVDQRLDPTGRNLLEPLDQIRDAVAVFG-DYRAAWP 548

Query: 483  -IDRAGLYQGALSIAPLAAAYEHTLQQRFLPYVATVLEGRVRGSLGDREQLLDNLRAYLM 541
             +   GLYQG      +  AY   L +RFLP +A+ +   +  +    EQ +  LR Y M
Sbjct: 549  GVADLGLYQGRTIGPTVDEAYLSLLSRRFLPALASGVIEAMDAAPPGSEQQMAALRVYRM 608

Query: 542  LNLRERRDNAWLAEYVSGQWSGDSSANKRLNEHFARLLEQPFL-----APLDEALVARAR 596
            L  R  R   W+ ++++ QW        +L     R L+          P     V+  +
Sbjct: 609  LEDRRNRRAEWVEDWMARQWQQAFPGQGQLQRDLMRHLKYALTYADTDLPQYRQRVSHVQ 668

Query: 597  LVLRGESLAEVVYRALREQARNVEPYPL----AEGPAFSRVEP-------------PIPG 639
              LR   L + VY  L++QA+      L      GPAF  V                 P 
Sbjct: 669  QTLRKVPLPQRVYAGLKQQAQEQLHTGLDLRHQVGPAFDVVYQLSSGSSQGDNGVLLAPM 728

Query: 640  FYTRKYLQLFEQQGTQMVHAIAQDNWVLGEGG--DLGAADLRRLMLVLEQRYFSEYADVW 697
               + + + FE +  +       D W LGE    D   AD   L   L   Y ++Y D W
Sbjct: 729  LTAKGFKEYFEPRSQRFTEMAMIDQWALGERAQLDYSDADQAALNERLRNLYSADYIDSW 788

Query: 698  SDALGRIRLRESGSLQQGAEYLASLTSAQSALVQLLQQVRENTRLVS-----VSDRLETA 752
              AL    + +   L  G   L  L    + L +LL+ VR+N+ L+S     V+D   + 
Sbjct: 789  RRALNAFSVADFRDLDHGVTILEQLAGPAAPLHRLLETVRDNSSLLSPVNVGVADEAPSP 848

Query: 753  VQPVAGLGAVTSRSLARAGLPDNARRALQRRFEPLHQLLDEQQNPGGELTQALRLLDELQ 812
            V       ++ S+   +  L       +QR F  L  +L           +    +  + 
Sbjct: 849  V-------SINSKPEQQQAL------VIQRAFAGLSAMLHAAGEKPSYYDETHAAIVAVH 895

Query: 813  LQLSAVSRDSSPEQAAFKMARQR--MDGQQPLLGNLRDTAARFPQPLKGWFEGIADQSWR 870
                AV       +AA     QR  M G  P +G L+  A   P+P+      +A Q+ +
Sbjct: 896  DYAKAVQGSPDRGKAALHAVHQRFSMTGHDP-IGTLQRVATGLPEPINHHVRKVAHQTAQ 954

Query: 871  QLLDDAYGFVNQHYQNEVYGFYAKAIQRRYPFDAHAGSDVALGDFQAFFKPRGAMARFYE 930
             L  +A   + + +  EVY F+ + +  RYPF   A  D +L DF+AFF P G + +F +
Sbjct: 955  VLNVEALRELERRWDAEVYSFFQQRLAERYPFVVRA-PDASLEDFEAFFGPNGRLQQFQD 1013

Query: 931  SYLRPFVIVEGNRYRLR-GIEGRSLPMSRSLLEQLTRAQIIRQGFFTEDQGELAVRFTLA 989
             YL+ F  ++ N   L+ G++GRSL +   ++EQL RA  IR+ FF + +G L+V+F++ 
Sbjct: 1014 QYLKLF--LKDNLEALQNGLQGRSL-IRTDVIEQLERADRIRETFF-DQRGNLSVQFSIE 1069

Query: 990  PYSLDQAVSRATLRVGDQQLEYRHGPIVPVAFHWPNE-AENGRSSLVLERGAERPLGIEK 1048
            P  L      + L +  Q + Y HGP       WPN   ++ RS+L L R       +E 
Sbjct: 1070 PLGLSANQRTSLLDLDGQLISYTHGPSQITGIVWPNTLGQHVRSNLTLLRQNGNSSSLEY 1129

Query: 1049 DSGAWSLFRFFDLMQSEPASGRDAQVLKADLAGLRAN----YLLTSQRDSSPFQMATWRT 1104
              G WS+FR   L+     +GR A     DL+    +    Y L +++  +P     ++ 
Sbjct: 1130 -RGPWSMFR---LLSRGALNGRTA--TSVDLSFKTGDGVMRYRLNAEKAFNPITQQPFKG 1183

Query: 1105 FRLPEQL 1111
            FRLP  L
Sbjct: 1184 FRLPRGL 1190