Pairwise Alignments

Query, 413 a.a., exonuclease SbcD from Pseudomonas simiae WCS417

Subject, 410 a.a., exonuclease subunit SbcD from Dickeya dianthicola ME23

 Score =  176 bits (445), Expect = 1e-48
 Identities = 131/420 (31%), Positives = 208/420 (49%), Gaps = 31/420 (7%)

Query: 1   MRLFHTSDWHLGQNLHGQERDFEHACFLEWLLGQLKTHLPDVLLIAGDIFDTVNPPLKAQ 60
           MR+ HTSDWHLGQ  + + R  EH  FL WL+ Q++ H  D +++AGD+FD   PP  A+
Sbjct: 1   MRIIHTSDWHLGQYFYTRSRAPEHQAFLHWLVQQVEQHQADAVIVAGDVFDNGAPPSYAR 60

Query: 61  ERLYDFIISAHEQNPKLTIVMIAGNHDSGSRIELPAPLMRRLRTHALGRVLWLDDGQLDA 120
           E    F+++   Q     +V++ GNHDS + +     L+  L T    RV+   DG  D 
Sbjct: 61  EMYNQFVVAL--QRTGCQLVVMGGNHDSVATLNESRALLACLNT----RVVAGFDG--DI 112

Query: 121 ERLLIPLPDAKGKIAAWCLALPFLRPAEVTGAHLGDDYLRGIGQVHEWLIA--------A 172
              ++ L +  G+  A   A+PFLRP ++  +  G   ++    + + + +        A
Sbjct: 113 HEQVLVLNNRAGEPGALLCAVPFLRPRDLLTSQAGQSGVQKQQALQDAITSHYQRCYQLA 172

Query: 173 ANAKRKKGQALIAISHAHMAG-GSVSEDSERSLIIGNAEALPASLFDRSVAYVALGHLHK 231
              +   G+ L  +   H+   G  + DS R + IG  +A PA  F     Y+ALGH+H+
Sbjct: 173 CEQRETLGRELPIVLTGHLTTVGVATSDSVRDIYIGTLDAFPAQAFP-PADYIALGHIHR 231

Query: 232 PQKVNGEERIRYSGSPIPLSFSEIGYKHQILDVTFQGQCLVSVEPLLIPRSVDLQRLEAA 291
           PQ+V   E IRYSGSPIPLSF E+ ++  +  V F+   L  V  L +P    +Q L   
Sbjct: 232 PQRVAQCEHIRYSGSPIPLSFDELNHEKSVYLVHFEQGKLQEVAALTVPTEQPMQ-LVKG 290

Query: 292 PLADILKALAELPDIDLLAETQRHPWLEVRVRLDEPQPDLRQQIESALQ--GKAVRLVRI 349
            L++I + LA   D        +  WL++ +   +   D++Q I++  +     V L+R 
Sbjct: 291 NLSEIERRLAGFRDY----HGDKPVWLDIEIATQDYLSDMQQHIQALTEPLNVDVLLLRR 346

Query: 350 AAEYAGTGSREDEGDDRLIDLDQLTPQELFSRAWQDSYGSDVDEQTLKDFAVLLQEVQQE 409
           A E       + E +     L++L P E+F+R  + +  SD+DE        L  +V QE
Sbjct: 347 AREQQQQMLVQLEKE----TLEELHPAEVFAR--RLALESDLDEARQPRLKGLFDQVIQE 400