Pairwise Alignments

Query, 477 a.a., DNA-binding protein from Pseudomonas simiae WCS417

Subject, 509 a.a., Transcriptional regulator, GntR family from Pseudomonas putida KT2440

 Score =  274 bits (701), Expect = 4e-78
 Identities = 187/495 (37%), Positives = 260/495 (52%), Gaps = 30/495 (6%)

Query: 5   VVINGRKDLAEQLYQQLREAIGSGRLAAGAQLPPSRLLAQQLGVSRKTVSDTYATLTYEG 64
           + ++  + L++QLYQ LR  +  GRL++G +LP +R LA  L +SR +V   Y  L  EG
Sbjct: 15  IALDRSRGLSQQLYQALRARVLDGRLSSGTRLPATRDLAAMLALSRNSVVRAYDQLYAEG 74

Query: 65  LLIGKTGRGTFVNARAPQ------------------TERQQGATDLACAANL-AKWQSLP 105
            +  + G GT+V+ R P+                  T RQ+   DL+   ++ A  Q L 
Sbjct: 75  FIESRVGDGTYVS-RLPKLSTQVSTGLSLGLSTGLSTFRQENTEDLSSGRHISAPLQRLK 133

Query: 106 SPMRHPTRDSTLRYEFIGGATSRNQFPQDEWRRCTQDALRRIAQNSGFYSQPEGLPALRS 165
           +    P R S L   F  G  + + FP D W +      R  +     Y  P G PALR 
Sbjct: 134 NNHLPPPR-SGLPRAFRVGIPAFDLFPFDVWAKLQAGFWRNPSPAQLGYGDPAGEPALRD 192

Query: 166 AIAGHIAFSRGVNCRDSDIVVTNGAQQALDLIARVVLEPGSLVAMEDPGYSPARQMFMAM 225
            IA ++  SRG++C    IV+T+GAQQA+ L A+++L+PG  VA+E+PGY  A   F   
Sbjct: 193 LIAAYLRRSRGLSCTAEQIVITSGAQQAISLCAQLLLQPGDGVAVENPGYRAAAHAFTLA 252

Query: 226 GASVVSVPVDEQGIRVDRIPDGT--RLIYVTPSHQFPLGMPMSPARREALLARAFELGAI 283
           G  V  VPVDE G+   R+   T  RL YVTP+HQ+P G+ MS ARR ALLA A      
Sbjct: 253 GGRVCGVPVDEDGLDCGRLEQLTDCRLTYVTPAHQYPTGVTMSLARRLALLAWAERSDGW 312

Query: 284 IIEDDYDSEFRYEGRPTDSLQSLDTRGVVAYVGTFSKTLLPELRLGYAVLPPAIYGAVLK 343
           IIEDDYD E+RY G P   L +LD  G V YVGTF K   P LRLGY VLP  +  A  +
Sbjct: 313 IIEDDYDGEYRYSGAPLAPLAALDRHGRVLYVGTFGKIAFPALRLGYLVLPSKLVQAFSQ 372

Query: 344 AKQLTDQHSSTLPQWALAKFISEGYLLKHIRRCHTVYAGRRERILQRLAGDLSPWFEAVP 403
            + +  +HS    Q  +A+F++ G+  +HIRR       RR+ +      D+ P   A+P
Sbjct: 373 GRAIAVRHSEVSSQCVMAEFMARGHFQRHIRRMRKAALKRRDVLKAGWPVDI-PGLGAMP 431

Query: 404 TV-AGFHMAALCKVPVNIPLLMELARRVEVGVYPLDVFF---HDAPI--RPGLIIGFGAI 457
            V AG H+            L+  A  VEV V PL  F+    + P+  R GL++GF A+
Sbjct: 432 EVAAGLHVKVNVDNFAREQELVAKAEAVEVEVTPLSNFWLADCEVPVDKRAGLVLGFAAV 491

Query: 458 ETLDIDPALDKVRDI 472
              +I  AL K+R +
Sbjct: 492 PEGEIAEALMKLRKV 506