Pairwise Alignments

Query, 250 a.a., amino acid ABC transporter from Pseudomonas simiae WCS417

Subject, 261 a.a., lysine / arginine / ornithine ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  174 bits (440), Expect = 2e-48
 Identities = 107/255 (41%), Positives = 148/255 (58%), Gaps = 12/255 (4%)

Query: 5   KKFLLAAAVSMAFSATAMA--ETLKMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMK 62
           K  LL A     FS  + A  + LK+GIEAAYPPF  K   G++ GFD DIG+ALC +MK
Sbjct: 3   KLALLGALALSVFSLVSQAAEKPLKIGIEAAYPPFAFKQPDGSIAGFDYDIGNALCEEMK 62

Query: 63  VEKCEVYVSDWDGIIPALNAKKFDFLVSSLSITEERKAAVDFTDPYYSNKLQFIAPKATA 122
             KC     ++DG+IPAL  +K D ++SS+SIT++RK +VDFT  YY    + +    T 
Sbjct: 63  T-KCTWVEQEFDGLIPALKVRKIDAILSSMSITDDRKKSVDFTKRYYLTPARLVMKDGTT 121

Query: 123 DFKTDAAYLKGKVIGAQRATLAGTYLEDKLPDTEAKL--YDTQENAYLDLTSGRLDGILA 180
                   LKGK IG QR ++   + ++ L    A +  Y TQ   YLD+ +GRLDG +A
Sbjct: 122 -VSDSLDELKGKKIGVQRGSIHDRFAKEVLGAKGATVVPYGTQNEIYLDVAAGRLDGTVA 180

Query: 181 D-KYVQYEWLKSKDGSAYEFKGDPVVES----DKIGIAVRKGDPLR-ERLNKALAEIKAD 234
           D   ++  +LK+  G  + F G    ++    D IGIAVRKGD    +R+N A+  I+A+
Sbjct: 181 DATLLEDGFLKTDAGKGFAFVGPAFTDAKYFGDGIGIAVRKGDKANVDRINAAIDAIRAN 240

Query: 235 GTYKKINDKYFPFSI 249
           G YK+I  KYF F I
Sbjct: 241 GKYKEIESKYFNFDI 255