Pairwise Alignments

Query, 250 a.a., amino acid ABC transporter from Pseudomonas simiae WCS417

Subject, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

 Score =  190 bits (483), Expect = 2e-53
 Identities = 110/250 (44%), Positives = 142/250 (56%), Gaps = 9/250 (3%)

Query: 5   KKFLLAAAVSMAFSATAMAETLKMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMKVE 64
           K   L  A ++  +  A AETL+   E AYPPFN  DA   + GFD DI  ALC +MKVE
Sbjct: 3   KSMALLGACALLLAGAASAETLRFATEGAYPPFNYVDADNKLHGFDVDITHALCEQMKVE 62

Query: 65  KCEVYVSDWDGIIPALNAKKFDFLVSSLSITEERKAAVDFTDPYYSNKLQFIAPKATADF 124
            C +   DW+GIIPAL A+K+D +V+S+  TEER+  + FTD YY   L     K   D 
Sbjct: 63  -CTLVAQDWEGIIPALMARKYDAIVASMIDTEERRKKIAFTDHYYRTPLTVAVAK---DS 118

Query: 125 KTDAAY--LKGKVIGAQRATLAGTYLEDKL--PDTEAKLYDTQENAYLDLTSGRLDGILA 180
           K D+A     G  +GAQ ++    Y ED       + KLY T + A  DL +GRLDG++A
Sbjct: 119 KIDSAQTDFVGYTVGAQSSSTQAIYAEDVYGKAGADVKLYPTMDEANADLAAGRLDGVIA 178

Query: 181 DKYVQYEWLKSKDGSAYEFKGDPVVESDKIGIAVRKGD-PLRERLNKALAEIKADGTYKK 239
           DK+  +EW+    G   +  GD         IAVRK D  LR+RLN AL +I A+GTY+K
Sbjct: 179 DKFPLHEWMNKNGGDCCKILGDVADTKADAAIAVRKDDEALRQRLNTALQQIVANGTYQK 238

Query: 240 INDKYFPFSI 249
           I  KYF F I
Sbjct: 239 IASKYFAFDI 248